{"id":"https://openalex.org/W3214361435","doi":"https://doi.org/10.1093/bioinformatics/btab754","title":"Mian: interactive web-based microbiome data table visualization and machine learning platform","display_name":"Mian: interactive web-based microbiome data table visualization and machine learning platform","publication_year":2021,"publication_date":"2021-11-05","ids":{"openalex":"https://openalex.org/W3214361435","doi":"https://doi.org/10.1093/bioinformatics/btab754","mag":"3214361435","pmid":"https://pubmed.ncbi.nlm.nih.gov/34788784"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab754","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab754","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044718066","display_name":"Boyang Tom Jin","orcid":"https://orcid.org/0000-0003-4810-5816"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Boyang Tom Jin","raw_affiliation_strings":["Department of Computer Science, Stanford University , Stanford, CA, USA 94305"],"raw_orcid":"https://orcid.org/0000-0003-4810-5816","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Stanford, CA, USA 94305","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101717511","display_name":"Feng Xu","orcid":"https://orcid.org/0000-0002-1122-0581"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Feng Xu","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, University of British Columbia , Vancouver, BC, Canada V6Z1Y6"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, University of British Columbia , Vancouver, BC, Canada V6Z1Y6","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113567130","display_name":"Raymond T. Ng","orcid":"https://orcid.org/0000-0003-3692-8524"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Raymond T Ng","raw_affiliation_strings":["Department of Computer Science, University of British Columbia , Vancouver, BC, Canada V6T1Z4"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of British Columbia , Vancouver, BC, Canada V6T1Z4","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091776168","display_name":"James C. Hogg","orcid":"https://orcid.org/0000-0001-9930-1935"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"James C Hogg","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, University of British Columbia , Vancouver, BC, Canada V6Z1Y6"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, University of British Columbia , Vancouver, BC, Canada V6Z1Y6","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044718066"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2586,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.7955153,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"4","first_page":"1176","last_page":"1178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.2287999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.2287999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.15189999341964722,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.05530000105500221,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7612071633338928},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.595833420753479},{"id":"https://openalex.org/keywords/categorical-variable","display_name":"Categorical variable","score":0.5329336524009705},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5149005651473999},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.511116087436676},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47846317291259766},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4685087502002716},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4470594823360443},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42366737127304077},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4153212010860443},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.41342973709106445},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.3355783522129059},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32299482822418213},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21808740496635437},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11909136176109314}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7612071633338928},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.595833420753479},{"id":"https://openalex.org/C5274069","wikidata":"https://www.wikidata.org/wiki/Q2285707","display_name":"Categorical variable","level":2,"score":0.5329336524009705},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5149005651473999},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.511116087436676},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47846317291259766},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4685087502002716},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4470594823360443},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42366737127304077},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4153212010860443},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.41342973709106445},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.3355783522129059},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32299482822418213},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21808740496635437},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11909136176109314},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab754","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab754","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34788784","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34788784","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1931450175","https://openalex.org/W1987184081","https://openalex.org/W1995962575","https://openalex.org/W2003384436","https://openalex.org/W2020398205","https://openalex.org/W2036509718","https://openalex.org/W2057285125","https://openalex.org/W2103412200","https://openalex.org/W2108718991","https://openalex.org/W2117457769","https://openalex.org/W2168249366","https://openalex.org/W2225659342","https://openalex.org/W2401404581","https://openalex.org/W2592367925","https://openalex.org/W2608515760","https://openalex.org/W2787894218","https://openalex.org/W2953583829","https://openalex.org/W2963276645","https://openalex.org/W3093405588","https://openalex.org/W4240537708"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W2046541848","https://openalex.org/W22571951","https://openalex.org/W4309247532","https://openalex.org/W4384009753","https://openalex.org/W2791776396","https://openalex.org/W4286531993","https://openalex.org/W2964820744"],"abstract_inverted_index":{"SUMMARY:":[0],"Mian":[1,80,86],"is":[2,81,87],"a":[3],"web":[4],"application":[5],"to":[6,28],"interactively":[7],"visualize,":[8],"run":[9],"statistical":[10],"tools":[11],"and":[12,58,61,64,73],"train":[13],"machine":[14],"learning":[15],"models":[16],"on":[17,76],"operational":[18],"taxonomic":[19,31,36],"unit":[20],"(OTU)":[21],"or":[22,35,45],"amplicon":[23],"sequence":[24],"variant":[25],"(ASV)":[26],"datasets":[27],"identify":[29],"key":[30],"groups,":[32],"diversity":[33],"trends":[34],"composition":[37],"shifts":[38],"in":[39],"the":[40,93],"context":[41],"of":[42],"provided":[43],"categorical":[44],"numerical":[46],"sample":[47],"metadata.":[48],"Tools,":[49],"including":[50],"Fisher's":[51],"exact":[52],"test,":[53],"Boruta":[54],"feature":[55],"selection,":[56],"alpha":[57],"beta":[59],"diversity,":[60],"random":[62],"forest":[63],"deep":[65],"neural":[66],"network":[67],"classifiers,":[68],"facilitate":[69],"open-ended":[70],"data":[71,105],"exploration":[72],"hypothesis":[74],"generation":[75],"microbial":[77],"datasets.":[78],"AVAILABILITY:":[79],"freely":[82],"available":[83,99,107],"at:":[84],"miandata.org.":[85],"an":[88],"open-source":[89],"platform":[90],"licensed":[91],"under":[92],"MIT":[94],"license":[95],"with":[96],"source":[97],"code":[98],"at":[100,108],"github.com/tbj128/mian.":[101],"SUPPLEMENTARY":[102],"INFORMATION:":[103],"Supplementary":[104],"are":[106],"Bioinformatics":[109],"online.":[110]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
