{"id":"https://openalex.org/W3210982033","doi":"https://doi.org/10.1093/bioinformatics/btab746","title":"CpG Transformer for imputation of single-cell methylomes","display_name":"CpG Transformer for imputation of single-cell methylomes","publication_year":2021,"publication_date":"2021-10-25","ids":{"openalex":"https://openalex.org/W3210982033","doi":"https://doi.org/10.1093/bioinformatics/btab746","mag":"3210982033","pmid":"https://pubmed.ncbi.nlm.nih.gov/34718418"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab746","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab746","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/3/597/42167564/btab746.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/3/597/42167564/btab746.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052622361","display_name":"Gaetan De Waele","orcid":"https://orcid.org/0000-0003-0367-9699"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gaetan De Waele","raw_affiliation_strings":["Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039596012","display_name":"Jim Clauwaert","orcid":"https://orcid.org/0000-0002-5876-1406"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jim Clauwaert","raw_affiliation_strings":["Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058473391","display_name":"Gerben Menschaert","orcid":null},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gerben Menschaert","raw_affiliation_strings":["Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028945060","display_name":"Willem Waegeman","orcid":"https://orcid.org/0000-0002-5950-3003"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Willem Waegeman","raw_affiliation_strings":["Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Data Analysis and Mathematical Modelling, Ghent University , Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028945060"],"corresponding_institution_ids":["https://openalex.org/I32597200"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7895,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.85831253,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"38","issue":"3","first_page":"597","last_page":"603"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5987968444824219},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.5736667513847351},{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.48026275634765625},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22677379846572876},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.165473073720932},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.11104720830917358},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09094041585922241},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.05518198013305664}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5987968444824219},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.5736667513847351},{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.48026275634765625},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22677379846572876},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.165473073720932},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.11104720830917358},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09094041585922241},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.05518198013305664},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab746","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab746","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/3/597/42167564/btab746.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34718418","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34718418","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:8738803","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/8738803","pdf_url":"https://biblio.ugent.be/publication/8738803/file/8738806.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1460-2059","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:8756163","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8756163","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab746","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab746","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/3/597/42167564/btab746.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G6416900324","display_name":null,"funder_award_id":"BOFGOA2020000703","funder_id":"https://openalex.org/F4320322603","funder_display_name":"Universiteit Gent"}],"funders":[{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3210982033.pdf","grobid_xml":"https://content.openalex.org/works/W3210982033.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1989568035","https://openalex.org/W2016279068","https://openalex.org/W2024081693","https://openalex.org/W2069796345","https://openalex.org/W2070339716","https://openalex.org/W2114970231","https://openalex.org/W2121417064","https://openalex.org/W2131971406","https://openalex.org/W2136680615","https://openalex.org/W2163480486","https://openalex.org/W2222000795","https://openalex.org/W2286667211","https://openalex.org/W2549518011","https://openalex.org/W2888957472","https://openalex.org/W2896457183","https://openalex.org/W2915194834","https://openalex.org/W2947161758","https://openalex.org/W2950884271","https://openalex.org/W2951432323","https://openalex.org/W2951699355","https://openalex.org/W2952935243","https://openalex.org/W2964110616","https://openalex.org/W2998108143","https://openalex.org/W3011641611","https://openalex.org/W3015468748","https://openalex.org/W3092292656","https://openalex.org/W3096508121","https://openalex.org/W3107924400","https://openalex.org/W3110028120","https://openalex.org/W3124346345","https://openalex.org/W3131922516","https://openalex.org/W3133458480","https://openalex.org/W3146944767","https://openalex.org/W3177828909","https://openalex.org/W4287704453","https://openalex.org/W4287724045","https://openalex.org/W4385245566","https://openalex.org/W6631190155","https://openalex.org/W6739901393","https://openalex.org/W6754402032","https://openalex.org/W6755207826","https://openalex.org/W6763618794","https://openalex.org/W6764680637","https://openalex.org/W6770903433","https://openalex.org/W6772372951","https://openalex.org/W6772853553","https://openalex.org/W6776048684","https://openalex.org/W6780145172","https://openalex.org/W6780226713","https://openalex.org/W6781533629"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W1531710418","https://openalex.org/W4211215373","https://openalex.org/W4396701345","https://openalex.org/W3217094455"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":6}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
