{"id":"https://openalex.org/W3195625008","doi":"https://doi.org/10.1093/bioinformatics/btab604","title":"qTeller: a tool for comparative multi-genomic gene expression analysis","display_name":"qTeller: a tool for comparative multi-genomic gene expression analysis","publication_year":2021,"publication_date":"2021-08-17","ids":{"openalex":"https://openalex.org/W3195625008","doi":"https://doi.org/10.1093/bioinformatics/btab604","mag":"3195625008","pmid":"https://pubmed.ncbi.nlm.nih.gov/34406385"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab604","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab604","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030752050","display_name":"Margaret Woodhouse","orcid":"https://orcid.org/0000-0003-2164-8300"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Margaret R Woodhouse","raw_affiliation_strings":["USDA-ARS, Corn Insects and Crop Genetics Research Unit , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"USDA-ARS, Corn Insects and Crop Genetics Research Unit , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I1312222531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051655938","display_name":"Shatabdi Sen","orcid":"https://orcid.org/0000-0002-4378-4437"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shatabdi Sen","raw_affiliation_strings":["Department of Plant Pathology & Microbiology, Iowa State University , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology & Microbiology, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000814657","display_name":"David A Schott","orcid":"https://orcid.org/0000-0002-8061-236X"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Schott","raw_affiliation_strings":["Department of Computer Science, Iowa State University , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046674201","display_name":"John L. Portwood","orcid":"https://orcid.org/0000-0002-6339-0881"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John L Portwood","raw_affiliation_strings":["USDA-ARS, Corn Insects and Crop Genetics Research Unit , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"USDA-ARS, Corn Insects and Crop Genetics Research Unit , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I1312222531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044050422","display_name":"Michael Freeling","orcid":"https://orcid.org/0000-0002-7221-8725"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Freeling","raw_affiliation_strings":["Department of Plant & Microbial Biology, University of California, Berkeley , Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant & Microbial Biology, University of California, Berkeley , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068125276","display_name":"Justin W. Walley","orcid":"https://orcid.org/0000-0001-7553-2237"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin W Walley","raw_affiliation_strings":["Department of Plant Pathology & Microbiology, Iowa State University , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology & Microbiology, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045214155","display_name":"Carson M. Andorf","orcid":"https://orcid.org/0000-0003-2380-6704"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carson M Andorf","raw_affiliation_strings":["Department of Computer Science, Iowa State University , Ames, IA 50011, USA","USDA-ARS, Corn Insects and Crop Genetics Research Unit , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"USDA-ARS, Corn Insects and Crop Genetics Research Unit , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I1312222531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048302859","display_name":"James C. Schnable","orcid":"https://orcid.org/0000-0001-6739-5527"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James C Schnable","raw_affiliation_strings":["Center for Plant Science Innovation & Department of Agronomy and Horticulture, University of Nebraska-Lincoln , Lincoln, NE 68588, USA"],"affiliations":[{"raw_affiliation_string":"Center for Plant Science Innovation & Department of Agronomy and Horticulture, University of Nebraska-Lincoln , Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5030752050"],"corresponding_institution_ids":["https://openalex.org/I1312222531"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8703,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.86376172,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"38","issue":"1","first_page":"236","last_page":"242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.7193741798400879},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6372424364089966},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.620516300201416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5431901216506958},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5280143618583679},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.49334779381752014},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.48646828532218933},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.48081696033477783},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.47783565521240234},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4295976161956787},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39387989044189453},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3682328462600708},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.32405930757522583}],"concepts":[{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.7193741798400879},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6372424364089966},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.620516300201416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5431901216506958},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5280143618583679},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.49334779381752014},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.48646828532218933},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.48081696033477783},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.47783565521240234},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4295976161956787},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39387989044189453},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3682328462600708},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.32405930757522583},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab604","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab604","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34406385","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34406385","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:plantscifacpub-1279","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/plantscifacpub/277","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Center for Plant Science Innovation: Faculty and Staff Publications","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1164091404","https://openalex.org/W1475896266","https://openalex.org/W1966327575","https://openalex.org/W1970892042","https://openalex.org/W1981509058","https://openalex.org/W1993623373","https://openalex.org/W2009014903","https://openalex.org/W2011301426","https://openalex.org/W2014704298","https://openalex.org/W2031371243","https://openalex.org/W2048568138","https://openalex.org/W2056573937","https://openalex.org/W2096808786","https://openalex.org/W2114104545","https://openalex.org/W2122599023","https://openalex.org/W2125066647","https://openalex.org/W2140729960","https://openalex.org/W2159839461","https://openalex.org/W2169456326","https://openalex.org/W2171990037","https://openalex.org/W2173877727","https://openalex.org/W2199044663","https://openalex.org/W2323326409","https://openalex.org/W2336835708","https://openalex.org/W2474869522","https://openalex.org/W2481195801","https://openalex.org/W2515922456","https://openalex.org/W2547405129","https://openalex.org/W2556467105","https://openalex.org/W2561669503","https://openalex.org/W2592811885","https://openalex.org/W2623168030","https://openalex.org/W2779829932","https://openalex.org/W2800031930","https://openalex.org/W2883756413","https://openalex.org/W2884730312","https://openalex.org/W2890447071","https://openalex.org/W2899669628","https://openalex.org/W2928777032","https://openalex.org/W2930487638","https://openalex.org/W2950544281","https://openalex.org/W2988463797","https://openalex.org/W2990586665","https://openalex.org/W2998649238","https://openalex.org/W3001191610","https://openalex.org/W3003501768","https://openalex.org/W3014227144","https://openalex.org/W6685630355","https://openalex.org/W6703664547","https://openalex.org/W6764271428"],"related_works":["https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2155595079","https://openalex.org/W2356429006","https://openalex.org/W2380568150","https://openalex.org/W2353729507","https://openalex.org/W2080758876","https://openalex.org/W2364340602","https://openalex.org/W1519370197"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":11}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}