{"id":"https://openalex.org/W3194231319","doi":"https://doi.org/10.1093/bioinformatics/btab597","title":"coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies","display_name":"coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies","publication_year":2021,"publication_date":"2021-08-16","ids":{"openalex":"https://openalex.org/W3194231319","doi":"https://doi.org/10.1093/bioinformatics/btab597","mag":"3194231319","pmid":"https://pubmed.ncbi.nlm.nih.gov/34406356"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab597","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab597","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060723/pdf/btab597.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017991162","display_name":"Dmitry Meleshko","orcid":"https://orcid.org/0000-0002-7398-9820"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]},{"id":"https://openalex.org/I4210100942","display_name":"Tri-Institutional PhD Program in Chemical Biology","ror":"https://ror.org/016twdg30","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100942"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Dmitry Meleshko","raw_affiliation_strings":["Center for Algorithmic Biotechnology, St. Petersburg State University , St. Peterburg 199004, Russia","Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University , New York, NY 10021, USA","Tri-Institutional PhD Program in Computational Biology and Medicine, Weill Cornell Medical College , New York, NY 10021, USA"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, St. Petersburg State University , St. Peterburg 199004, Russia","institution_ids":["https://openalex.org/I172901346"]},{"raw_affiliation_string":"Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University , New York, NY 10021, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Tri-Institutional PhD Program in Computational Biology and Medicine, Weill Cornell Medical College , New York, NY 10021, USA","institution_ids":["https://openalex.org/I4210100942","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068064308","display_name":"Iman Hajirasouliha","orcid":"https://orcid.org/0000-0002-0600-3371"},"institutions":[{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Iman Hajirasouliha","raw_affiliation_strings":["Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University , New York, NY 10021, USA","Englander Institute for Precision Medicine, The Meyer Cancer Center, Weill Cornell Medicine , New York, NY 10021, USA"],"affiliations":[{"raw_affiliation_string":"Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University , New York, NY 10021, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Englander Institute for Precision Medicine, The Meyer Cancer Center, Weill Cornell Medicine , New York, NY 10021, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082993256","display_name":"Anton Korobeynikov","orcid":"https://orcid.org/0000-0002-2937-9259"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Anton Korobeynikov","raw_affiliation_strings":["Center for Algorithmic Biotechnology, St. Petersburg State University , St. Peterburg 199004, Russia","Department of Statistical Modelling, St. Petersburg State University , St. Peterburg 198504, Russia"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, St. Petersburg State University , St. Peterburg 199004, Russia","institution_ids":["https://openalex.org/I172901346"]},{"raw_affiliation_string":"Department of Statistical Modelling, St. Petersburg State University , St. Peterburg 198504, Russia","institution_ids":["https://openalex.org/I172901346"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082993256"],"corresponding_institution_ids":["https://openalex.org/I172901346"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":9.7609,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.9863855,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"1","first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.819512128829956},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6985722780227661},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.690926194190979},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6650482416152954},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.6243219375610352},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6129239201545715},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.46289318799972534},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45925137400627136},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.44840291142463684},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.44126054644584656},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.43405550718307495},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.41042855381965637},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34524214267730713},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06741294264793396}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.819512128829956},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6985722780227661},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.690926194190979},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6650482416152954},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.6243219375610352},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6129239201545715},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.46289318799972534},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45925137400627136},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.44840291142463684},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.44126054644584656},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.43405550718307495},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.41042855381965637},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34524214267730713},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06741294264793396},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab597","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab597","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34406356","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34406356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10060723","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10060723","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060723/pdf/btab597.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10060723","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10060723","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060723/pdf/btab597.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G5008053224","display_name":null,"funder_award_id":"19-14-00172","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320322515","display_name":"Saint Petersburg State University","ror":"https://ror.org/023znxa73"},{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332513","display_name":"Weill Cornell Medical College","ror":"https://ror.org/02r109517"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3194231319.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W53816687","https://openalex.org/W1544561280","https://openalex.org/W1840089255","https://openalex.org/W1965669216","https://openalex.org/W1990545448","https://openalex.org/W2020301105","https://openalex.org/W2032136448","https://openalex.org/W2063797600","https://openalex.org/W2107772251","https://openalex.org/W2110233077","https://openalex.org/W2113679889","https://openalex.org/W2116279310","https://openalex.org/W2117386204","https://openalex.org/W2124648649","https://openalex.org/W2126419817","https://openalex.org/W2599417231","https://openalex.org/W2732496903","https://openalex.org/W2791400386","https://openalex.org/W2898402099","https://openalex.org/W2902131597","https://openalex.org/W2905286853","https://openalex.org/W2942002471","https://openalex.org/W2948090592","https://openalex.org/W2949491511","https://openalex.org/W2963600783","https://openalex.org/W2969431118","https://openalex.org/W2972131171","https://openalex.org/W3003217347","https://openalex.org/W3007223608","https://openalex.org/W3012510801","https://openalex.org/W3017703988","https://openalex.org/W3027089056","https://openalex.org/W3036135788","https://openalex.org/W3047701039","https://openalex.org/W3118048495","https://openalex.org/W3170734619","https://openalex.org/W4221049439","https://openalex.org/W4233453958","https://openalex.org/W4246297253"],"related_works":["https://openalex.org/W2055448750","https://openalex.org/W3134563641","https://openalex.org/W1986608492","https://openalex.org/W54719527","https://openalex.org/W4283384467","https://openalex.org/W2327661880","https://openalex.org/W4225379983","https://openalex.org/W2794975275","https://openalex.org/W3179112149","https://openalex.org/W2128222086"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
