{"id":"https://openalex.org/W3184618566","doi":"https://doi.org/10.1093/bioinformatics/btab565","title":"BioERP: biomedical heterogeneous network-based self-supervised representation learning approach for entity relationship predictions","display_name":"BioERP: biomedical heterogeneous network-based self-supervised representation learning approach for entity relationship predictions","publication_year":2021,"publication_date":"2021-07-29","ids":{"openalex":"https://openalex.org/W3184618566","doi":"https://doi.org/10.1093/bioinformatics/btab565","mag":"3184618566","pmid":"https://pubmed.ncbi.nlm.nih.gov/34329382"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab565","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab565","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100401784","display_name":"Xiaoqi Wang","orcid":"https://orcid.org/0000-0002-5868-5044"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqi Wang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China"],"raw_orcid":"https://orcid.org/0000-0002-5868-5044","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101520782","display_name":"Yaning Yang","orcid":"https://orcid.org/0000-0003-2408-4176"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaning Yang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078793726","display_name":"Kenli Li","orcid":"https://orcid.org/0000-0002-2635-7716"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kenli Li","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451425","display_name":"Wentao Li","orcid":"https://orcid.org/0000-0003-2313-6384"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wentao Li","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology , Changsha 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology , Changsha 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325881","display_name":"Fei Li","orcid":"https://orcid.org/0000-0003-1816-1761"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Li","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences , Beijing 100850, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences , Beijing 100850, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108008219","display_name":"Shaoliang Peng","orcid":"https://orcid.org/0000-0002-4647-2615"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]},{"id":"https://openalex.org/I4210126646","display_name":"Vanke (China)","ror":"https://ror.org/0329dzd04","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210126646"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaoliang Peng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China","Peng Cheng Laboratory, Vanke Cloud City Phase I Building , Shenzhen 518055, China","School of Computer Science, National University of Defense Technology , Changsha 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410082, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Peng Cheng Laboratory, Vanke Cloud City Phase I Building , Shenzhen 518055, China","institution_ids":["https://openalex.org/I4210136793","https://openalex.org/I4210126646"]},{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology , Changsha 410073, China","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100325881","https://openalex.org/A5108008219"],"corresponding_institution_ids":["https://openalex.org/I16609230","https://openalex.org/I170215575","https://openalex.org/I19820366","https://openalex.org/I4210108629","https://openalex.org/I4210126646","https://openalex.org/I4210136793"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4567,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.90709984,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"24","first_page":"4793","last_page":"4800"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.460999995470047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.460999995470047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.19789999723434448,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.12999999523162842,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8528563976287842},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.7000297904014587},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6408578157424927},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6247493028640747},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5956317186355591},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5656406283378601},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5582432746887207},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4729437828063965},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.45630282163619995},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.4545416831970215},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4383561909198761},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.434353768825531},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43191924691200256},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40740108489990234},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.33358168601989746}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8528563976287842},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.7000297904014587},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6408578157424927},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6247493028640747},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5956317186355591},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5656406283378601},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5582432746887207},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4729437828063965},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.45630282163619995},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.4545416831970215},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4383561909198761},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.434353768825531},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43191924691200256},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40740108489990234},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.33358168601989746},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab565","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab565","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34329382","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34329382","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4699999988079071,"display_name":"Partnerships for the goals"},{"id":"https://metadata.un.org/sdg/9","score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1328409166","display_name":null,"funder_award_id":"61625202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2444451036","display_name":null,"funder_award_id":"2017YFB0202104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3535329794","display_name":null,"funder_award_id":"2016YFB0200400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4111034471","display_name":null,"funder_award_id":"U1435222","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G512176667","display_name":"\u9762\u5411\u57ce\u5e02\u8ba1\u7b97\u7684\u534f\u4f5c\u8ba4\u77e5\u65e0\u7ebf\u7535\u7f51\u7edc\u8d44\u6e90\u4f18\u5316\u7406\u8bba\u4e0e\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61272056","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5631792370","display_name":null,"funder_award_id":"61772543","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6108818243","display_name":null,"funder_award_id":"2017YFB0202602","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6593862345","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7241573085","display_name":null,"funder_award_id":"2017YFC1311003","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7572661501","display_name":null,"funder_award_id":"2016YFC1302500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8028094890","display_name":null,"funder_award_id":"U19A2067","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8617305348","display_name":null,"funder_award_id":"81973244","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326217","display_name":"Hunan Provincial Innovation Foundation for Postgraduate","ror":null},{"id":"https://openalex.org/F4320326871","display_name":"State Key Laboratory of Chemo/Biosensing and Chemometrics","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W103340358","https://openalex.org/W2017986542","https://openalex.org/W2066201825","https://openalex.org/W2097308346","https://openalex.org/W2098427571","https://openalex.org/W2099688794","https://openalex.org/W2103478816","https://openalex.org/W2119821739","https://openalex.org/W2123688186","https://openalex.org/W2137084389","https://openalex.org/W2154718035","https://openalex.org/W2161607603","https://openalex.org/W2336207313","https://openalex.org/W2465613542","https://openalex.org/W2562531153","https://openalex.org/W2746374269","https://openalex.org/W2753953057","https://openalex.org/W2786016794","https://openalex.org/W2786757148","https://openalex.org/W2799259690","https://openalex.org/W2890210261","https://openalex.org/W2896725104","https://openalex.org/W2904726360","https://openalex.org/W2911932738","https://openalex.org/W2911964244","https://openalex.org/W2946099214","https://openalex.org/W2952522777","https://openalex.org/W2962969117","https://openalex.org/W2963224980","https://openalex.org/W2963707260","https://openalex.org/W2969996838","https://openalex.org/W2977707586","https://openalex.org/W3003038853","https://openalex.org/W3012421327","https://openalex.org/W3045879648","https://openalex.org/W3091928167","https://openalex.org/W3092613928","https://openalex.org/W3116099552","https://openalex.org/W3134084134","https://openalex.org/W3167140978","https://openalex.org/W4239510810","https://openalex.org/W6780672147","https://openalex.org/W6784051774","https://openalex.org/W6796469873"],"related_works":["https://openalex.org/W2983142544","https://openalex.org/W2891059443","https://openalex.org/W4281663961","https://openalex.org/W3208888551","https://openalex.org/W4220682630","https://openalex.org/W4313561566","https://openalex.org/W3208386644","https://openalex.org/W3181622257","https://openalex.org/W3133533225","https://openalex.org/W3163146846"],"abstract_inverted_index":{"MOTIVATION:":[0],"Predicting":[1],"entity":[2,70,104],"relationship":[3,71,175],"can":[4,91,185],"greatly":[5],"benefit":[6],"important":[7],"biomedical":[8,15,103],"problems.":[9],"Recently,":[10],"a":[11,63,85,102,172],"large":[12],"amount":[13],"of":[14,114,159],"heterogeneous":[16],"networks":[17],"(BioHNs)":[18],"are":[19,45,123,194],"generated":[20],"and":[21,44,51,96,161,183],"offer":[22],"opportunities":[23],"for":[24,69,130],"developing":[25],"network-based":[26],"learning":[27,42,67,106],"approaches":[28],"to":[29,47,83,110,125,155],"predict":[30],"relationships":[31,132],"among":[32,55,133],"entities.":[33,56,134],"However,":[34],"current":[35],"researches":[36],"slightly":[37],"explored":[38],"BioHNs-based":[39],"self-supervised":[40,65,76],"representation":[41,66,128],"methods,":[43],"hard":[46],"simultaneously":[48],"capturing":[49],"local-":[50],"global-level":[52],"association":[53],"information":[54],"RESULTS:":[57],"In":[58,146,168],"this":[59],"study,":[60],"we":[61],"propose":[62],"BioHN-based":[64],"approach":[68],"predictions,":[72],"termed":[73],"BioERP.":[74],"A":[75],"meta":[77],"path":[78],"detection":[79],"mechanism":[80],"is":[81,108,171],"proposed":[82],"train":[84],"deep":[86],"Transformer":[87],"encoder":[88],"model":[89],"that":[90],"capture":[92],"the":[93,117,164],"global":[94],"structure":[95],"semantic":[97],"feature":[98],"in":[99,157],"BioHNs.":[100],"Meanwhile,":[101],"mask":[105],"strategy":[107],"designed":[109],"reflect":[111],"local":[112],"associations":[113],"vertices.":[115],"Finally,":[116],"representations":[118],"from":[119,188],"different":[120],"task":[121],"models":[122],"concatenated":[124],"generate":[126],"two-level":[127],"vectors":[129],"predicting":[131],"The":[135],"results":[136,153],"on":[137,163],"eight":[138],"datasets":[139],"show":[140],"BioERP":[141,148,170],"outperforms":[142],"30":[143],"state-of-the-art":[144],"methods.":[145],"particular,":[147],"reveals":[149],"great":[150],"performance":[151],"with":[152],"close":[154],"1":[156],"terms":[158],"AUC":[160],"AUPR":[162],"drug-target":[165],"interaction":[166],"predictions.":[167],"summary,":[169],"promising":[173],"bio-entity":[174],"prediction":[176],"approach.":[177],"AVAILABILITY":[178],"AND":[179],"IMPLEMENTATION:":[180],"Source":[181],"code":[182],"data":[184,193],"be":[186],"downloaded":[187],"https://github.com/pengsl-lab/BioERP.git.":[189],"SUPPLEMENTARY":[190],"INFORMATION:":[191],"Supplementary":[192],"available":[195],"at":[196],"Bioinformatics":[197],"online.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
