{"id":"https://openalex.org/W3191422721","doi":"https://doi.org/10.1093/bioinformatics/btab559","title":"LipiDisease: associate lipids to diseases using literature mining","display_name":"LipiDisease: associate lipids to diseases using literature mining","publication_year":2021,"publication_date":"2021-08-05","ids":{"openalex":"https://openalex.org/W3191422721","doi":"https://doi.org/10.1093/bioinformatics/btab559","mag":"3191422721"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab559","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab559","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3981/41091857/btab559.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3981/41091857/btab559.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049567142","display_name":"Piyush More","orcid":"https://orcid.org/0000-0002-6232-6124"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Piyush More","raw_affiliation_strings":["Department of Pharmacology, University Medical Center , 55131 Mainz, Germany","Faculty of Biology, Johannes Gutenberg University of Mainz , 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacology, University Medical Center , 55131 Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Faculty of Biology, Johannes Gutenberg University of Mainz , 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054823577","display_name":"Laura B\u00eendil\u0103","orcid":"https://orcid.org/0000-0001-5538-2008"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Laura Bindila","raw_affiliation_strings":["Clinical Lipidomics Unit, Institute of Physiological Chemistry, University Medical Center , 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Clinical Lipidomics Unit, Institute of Physiological Chemistry, University Medical Center , 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022358930","display_name":"Philipp S. Wild","orcid":"https://orcid.org/0000-0003-4413-9752"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Wild","raw_affiliation_strings":["Center for Thrombosis and Hemostasis (CTH), University Medical Center , 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Thrombosis and Hemostasis (CTH), University Medical Center , 55131 Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010178662","display_name":"Miguel A. Andrade\u2010Navarro","orcid":"https://orcid.org/0000-0001-6650-1711"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Miguel Andrade-Navarro","raw_affiliation_strings":["Faculty of Biology, Johannes Gutenberg University of Mainz , 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Johannes Gutenberg University of Mainz , 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055724941","display_name":"Jean\u2212Fred Fontaine","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jean-Fred Fontaine","raw_affiliation_strings":["Faculty of Biology, Johannes Gutenberg University of Mainz , 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Johannes Gutenberg University of Mainz , 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5049567142"],"corresponding_institution_ids":["https://openalex.org/I197323543","https://openalex.org/I4210094062"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.732,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.6927602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"21","first_page":"3981","last_page":"3982"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lipidomics","display_name":"Lipidomics","score":0.5925491452217102},{"id":"https://openalex.org/keywords/lipid-metabolism","display_name":"Lipid metabolism","score":0.47232311964035034},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4474211633205414},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.44148653745651245},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42720746994018555},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42454758286476135},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36639201641082764},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36610713601112366},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.29646405577659607},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.16324511170387268},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08648344874382019}],"concepts":[{"id":"https://openalex.org/C58017582","wikidata":"https://www.wikidata.org/wiki/Q6556376","display_name":"Lipidomics","level":2,"score":0.5925491452217102},{"id":"https://openalex.org/C4733338","wikidata":"https://www.wikidata.org/wiki/Q2792936","display_name":"Lipid metabolism","level":2,"score":0.47232311964035034},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4474211633205414},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.44148653745651245},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42720746994018555},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42454758286476135},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36639201641082764},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36610713601112366},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.29646405577659607},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.16324511170387268},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08648344874382019}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab559","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab559","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3981/41091857/btab559.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8686672","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8686672","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab559","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab559","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3981/41091857/btab559.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7599999904632568,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3191422721.pdf","grobid_xml":"https://content.openalex.org/works/W3191422721.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1722951830","https://openalex.org/W2110065044","https://openalex.org/W2113904019","https://openalex.org/W2116687544","https://openalex.org/W2138924321","https://openalex.org/W2165681080","https://openalex.org/W2236822143","https://openalex.org/W2560819412","https://openalex.org/W2582743722","https://openalex.org/W2624697526","https://openalex.org/W2679693737","https://openalex.org/W2795506919","https://openalex.org/W2796672103","https://openalex.org/W2938288400","https://openalex.org/W2949923941","https://openalex.org/W3110553705","https://openalex.org/W6738653334"],"related_works":["https://openalex.org/W2017497567","https://openalex.org/W2804498896","https://openalex.org/W2091512523","https://openalex.org/W4238045650","https://openalex.org/W2117748922","https://openalex.org/W3189796603","https://openalex.org/W4399140277","https://openalex.org/W2440976754","https://openalex.org/W2963386271","https://openalex.org/W4386438156"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"Lipids":[2],"exhibit":[3],"an":[4],"essential":[5],"role":[6,58],"in":[7,33,52,62],"cellular":[8,40],"assembly":[9],"and":[10,28,42,108,113,132,148,161],"signaling.":[11],"Dysregulation":[12],"of":[13,48,59,80,98,146],"these":[14],"functions":[15,41],"has":[16,64],"been":[17,65],"linked":[18],"with":[19],"many":[20],"complications":[21],"including":[22],"obesity,":[23],"diabetes,":[24],"metabolic":[25],"disorders,":[26],"cancer":[27],"more.":[29],"Investigating":[30],"lipid":[31,82],"profiles":[32],"such":[34],"conditions":[35],"can":[36,166],"provide":[37],"insights":[38],"into":[39,128],"possible":[43],"interventions.":[44],"Hence":[45],"the":[46,57,77,90,101,136,139,144,156],"field":[47],"lipidomics":[49],"is":[50,68],"expanding":[51],"recent":[53],"years.":[54],"Even":[55],"though":[56],"individual":[60],"lipids":[61,107,149],"diseases":[63,131,147],"investigated,":[66],"there":[67],"no":[69],"resource":[70],"to":[71,117],"perform":[72],"disease":[73],"enrichment":[74],"analysis":[75],"considering":[76],"cumulative":[78],"association":[79,112],"a":[81],"set.":[83],"To":[84],"address":[85],"this,":[86],"we":[87],"have":[88],"implemented":[89],"LipiDisease":[91,164],"web":[92],"server.":[93],"The":[94,125,163],"tool":[95,126,137],"analyzes":[96],"millions":[97],"records":[99],"from":[100,141],"PubMed":[102,142],"biomedical":[103,157],"literature":[104,158],"database":[105],"discussing":[106],"diseases,":[109],"predicts":[110],"their":[111],"ranks":[114],"them":[115],"according":[116],"false":[118],"discovery":[119],"rates":[120],"generated":[121],"by":[122],"random":[123],"simulations.":[124],"takes":[127],"account":[129],"4270":[130],"4798":[133],"lipids.":[134],"Since":[135],"extracts":[138],"information":[140,173],"records,":[143],"number":[145],"will":[150],"be":[151,167],"expanded":[152],"over":[153],"time":[154],"as":[155],"grows.":[159],"Availability":[160],"implementation":[162],"webserver":[165],"freely":[168],"accessed":[169],"at":[170,178],"http://cbdm-01.zdv.uni-mainz.de:3838/piyusmor/LipiDisease/.":[171],"Supplementary":[172,174],"data":[175],"are":[176],"available":[177],"Bioinformatics":[179],"online.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
