{"id":"https://openalex.org/W3177622815","doi":"https://doi.org/10.1093/bioinformatics/btab529","title":"3Cnet: pathogenicity prediction of human variants using multitask learning with evolutionary constraints","display_name":"3Cnet: pathogenicity prediction of human variants using multitask learning with evolutionary constraints","publication_year":2021,"publication_date":"2021-07-15","ids":{"openalex":"https://openalex.org/W3177622815","doi":"https://doi.org/10.1093/bioinformatics/btab529","mag":"3177622815","pmid":"https://pubmed.ncbi.nlm.nih.gov/34270679"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab529","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4626/41726674/btab529.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4626/41726674/btab529.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009802959","display_name":"Dhong\u2010gun Won","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dhong-Gun Won","raw_affiliation_strings":["Research and Development Center , 3billion, Seoul 06193, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Research and Development Center , 3billion, Seoul 06193, Republic of Korea","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359350","display_name":"Dongwook Kim","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dong-Wook Kim","raw_affiliation_strings":["Research and Development Center , 3billion, Seoul 06193, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Research and Development Center , 3billion, Seoul 06193, Republic of Korea","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065440988","display_name":"Junwoo Woo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Junwoo Woo","raw_affiliation_strings":["Research and Development Center , 3billion, Seoul 06193, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Research and Development Center , 3billion, Seoul 06193, Republic of Korea","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088228762","display_name":"Kyoungyeul Lee","orcid":"https://orcid.org/0000-0003-0572-4289"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Kyoungyeul Lee","raw_affiliation_strings":["Research and Development Center , 3billion, Seoul 06193, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Research and Development Center , 3billion, Seoul 06193, Republic of Korea","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5088228762"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.0592,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.96736376,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"37","issue":"24","first_page":"4626","last_page":"4634"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.8491649031639099},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6974416971206665},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.6607387065887451},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6244181394577026},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5752362012863159},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5612777471542358},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4661368727684021},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4524754583835602},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.41195201873779297},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16961520910263062},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14119106531143188},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08782082796096802}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.8491649031639099},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6974416971206665},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.6607387065887451},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6244181394577026},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5752362012863159},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5612777471542358},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4661368727684021},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4524754583835602},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41195201873779297},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16961520910263062},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14119106531143188},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08782082796096802},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab529","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4626/41726674/btab529.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34270679","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34270679","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8665754","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8665754","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab529","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4626/41726674/btab529.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3177622815.pdf","grobid_xml":"https://content.openalex.org/works/W3177622815.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W154377515","https://openalex.org/W1965691313","https://openalex.org/W1980740976","https://openalex.org/W2008627757","https://openalex.org/W2010595044","https://openalex.org/W2011582941","https://openalex.org/W2017818880","https://openalex.org/W2051210555","https://openalex.org/W2051978340","https://openalex.org/W2059145105","https://openalex.org/W2064675550","https://openalex.org/W2076048958","https://openalex.org/W2087588809","https://openalex.org/W2092138236","https://openalex.org/W2100867326","https://openalex.org/W2104549677","https://openalex.org/W2114029728","https://openalex.org/W2159522138","https://openalex.org/W2174602966","https://openalex.org/W2238514531","https://openalex.org/W2256016639","https://openalex.org/W2262431763","https://openalex.org/W2309021002","https://openalex.org/W2356454710","https://openalex.org/W2521967673","https://openalex.org/W2557981253","https://openalex.org/W2624871570","https://openalex.org/W2720897370","https://openalex.org/W2746808752","https://openalex.org/W2763010484","https://openalex.org/W2766254093","https://openalex.org/W2883972171","https://openalex.org/W2905452503","https://openalex.org/W2945096435","https://openalex.org/W2949886398","https://openalex.org/W2951133052","https://openalex.org/W3086776939","https://openalex.org/W4230932396","https://openalex.org/W4385245566","https://openalex.org/W6739365718","https://openalex.org/W6739901393","https://openalex.org/W6742813915"],"related_works":["https://openalex.org/W1574414179","https://openalex.org/W4362597605","https://openalex.org/W2922073769","https://openalex.org/W4297676672","https://openalex.org/W4281702477","https://openalex.org/W4378510483","https://openalex.org/W2490526372","https://openalex.org/W4376166922","https://openalex.org/W1969895229","https://openalex.org/W2108497208"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
