{"id":"https://openalex.org/W3185042382","doi":"https://doi.org/10.1093/bioinformatics/btab527","title":"miRAnno\u2014network-based functional microRNA annotation","display_name":"miRAnno\u2014network-based functional microRNA annotation","publication_year":2021,"publication_date":"2021-07-17","ids":{"openalex":"https://openalex.org/W3185042382","doi":"https://doi.org/10.1093/bioinformatics/btab527","mag":"3185042382","pmid":"https://pubmed.ncbi.nlm.nih.gov/34297061"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab527","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab527","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068185631","display_name":"Tom\u00e1\u0161 Tok\u00e1r","orcid":"https://orcid.org/0000-0002-4873-0032"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Tomas Tokar","raw_affiliation_strings":["Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4873-0032","affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085732287","display_name":"Chiara Pastrello","orcid":"https://orcid.org/0000-0002-1934-7472"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chiara Pastrello","raw_affiliation_strings":["Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004328926","display_name":"Mark Abovsky","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mark Abovsky","raw_affiliation_strings":["Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088667484","display_name":"Sara Rahmati","orcid":"https://orcid.org/0000-0002-2009-4660"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sara Rahmati","raw_affiliation_strings":["Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I207624831","display_name":"Slovak Academy of Sciences","ror":"https://ror.org/03h7qq074","country_code":"SK","type":"government","lineage":["https://openalex.org/I207624831"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210145572","display_name":"Institute of Neuroimmunology of the Slovak Academy of Sciences","ror":"https://ror.org/05c516317","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210145572"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA","SK"],"is_corresponding":true,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["Departments of Medical Biophysics and Computer Science, University of Toronto , Toronto, Ontario, Canada","Institute of Neuroimmunology, Slovak Academy of Sciences , Bratislava, Slovakia","Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0002-2507-946X","affiliations":[{"raw_affiliation_string":"Departments of Medical Biophysics and Computer Science, University of Toronto , Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Institute of Neuroimmunology, Slovak Academy of Sciences , Bratislava, Slovakia","institution_ids":["https://openalex.org/I4210145572","https://openalex.org/I207624831"]},{"raw_affiliation_string":"Osteoarthritis Research Program Division of Orthopedic Surgery Schroeder Arthritis Institute, and Data Science Discovery Centre for Chronic Diseases Krembil Research Institute, University Health Network, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5055656807"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I207624831","https://openalex.org/I2800133710","https://openalex.org/I4210145572","https://openalex.org/I4388446386"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.175,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.43645199,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"38","issue":"2","first_page":"592","last_page":"593"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9409000277519226,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9409000277519226,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8171183466911316},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7065909504890442},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6349740028381348},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47964173555374146},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.43828505277633667},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3861730396747589},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3548218011856079},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21188992261886597},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08761948347091675},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07855421304702759}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8171183466911316},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7065909504890442},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6349740028381348},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47964173555374146},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.43828505277633667},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3861730396747589},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3548218011856079},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21188992261886597},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08761948347091675},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07855421304702759},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab527","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab527","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34297061","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34297061","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3972044157","display_name":null,"funder_award_id":"30865","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G4029805389","display_name":null,"funder_award_id":"225404","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G7029236061","display_name":null,"funder_award_id":"29272","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"}],"funders":[{"id":"https://openalex.org/F4320307762","display_name":"International Business Machines Corporation","ror":"https://ror.org/05hh8d621"},{"id":"https://openalex.org/F4320311433","display_name":"University Health Network","ror":"https://ror.org/042xt5161"},{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1996804310","https://openalex.org/W2005403381","https://openalex.org/W2079511965","https://openalex.org/W2105776484","https://openalex.org/W2135849647","https://openalex.org/W2146276081","https://openalex.org/W2768781242","https://openalex.org/W2782759066","https://openalex.org/W2899942534","https://openalex.org/W2979975313","https://openalex.org/W2998008364","https://openalex.org/W6608852248","https://openalex.org/W6675966139","https://openalex.org/W6772218075"],"related_works":["https://openalex.org/W151193258","https://openalex.org/W1892467659","https://openalex.org/W1529400504","https://openalex.org/W1607472309","https://openalex.org/W1871911958","https://openalex.org/W2998403542","https://openalex.org/W2808586768","https://openalex.org/W3107474891","https://openalex.org/W1490908374","https://openalex.org/W4243624632"],"abstract_inverted_index":{"MOTIVATION:":[0],"Functional":[1],"annotation":[2],"is":[3,75],"a":[4,26],"common":[5],"part":[6],"of":[7,17],"microRNA":[8],"(miRNA)-related":[9],"research,":[10],"typically":[11],"carried":[12],"as":[13],"pathway":[14],"enrichment":[15,69],"analysis":[16],"the":[18,49,67],"selected":[19],"miRNA":[20,33],"targets.":[21],"Here,":[22],"we":[23],"propose":[24],"miRAnno,":[25],"fast":[27],"and":[28,42,53],"easy-to-use":[29],"web":[30],"application":[31],"for":[32],"annotation.":[34],"RESULTS:":[35],"miRAnno":[36,60,74],"uses":[37],"comprehensive":[38],"molecular":[39],"interaction":[40],"network":[41],"random":[43],"walks":[44],"with":[45],"restart":[46],"to":[47,66],"measure":[48],"association":[50],"between":[51],"miRNAs":[52],"individual":[54],"pathways.":[55],"Independent":[56],"validation":[57],"shows":[58],"that":[59],"achieves":[61],"higher":[62],"signal-to-noise":[63],"ratio":[64],"compared":[65],"standard":[68],"analysis.":[70],"AVAILABILITY":[71],"AND":[72],"IMPLEMENTATION:":[73],"freely":[76],"available":[77,85],"at":[78,86],"https://ophid.utoronto.ca/miRAnno/.":[79],"SUPPLEMENTARY":[80],"INFORMATION:":[81],"Supplementary":[82],"data":[83],"are":[84],"Bioinformatics":[87],"online.":[88]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
