{"id":"https://openalex.org/W3180564238","doi":"https://doi.org/10.1093/bioinformatics/btab525","title":"Phosphate binding sites prediction in phosphorylation-dependent protein\u2013protein interactions","display_name":"Phosphate binding sites prediction in phosphorylation-dependent protein\u2013protein interactions","publication_year":2021,"publication_date":"2021-07-13","ids":{"openalex":"https://openalex.org/W3180564238","doi":"https://doi.org/10.1093/bioinformatics/btab525","mag":"3180564238","pmid":"https://pubmed.ncbi.nlm.nih.gov/34270697"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab525","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab525","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078767289","display_name":"Zheng-Chang Lu","orcid":"https://orcid.org/0000-0001-6046-8463"},"institutions":[{"id":"https://openalex.org/I4210102541","display_name":"Shenzhen Bay Laboratory","ror":"https://ror.org/00sdcjz77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102541"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng-Chang Lu","raw_affiliation_strings":["Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School , Shenzhen 518132, China","Shenzhen Bay Laboratory , Shenzhen 518132, China"],"affiliations":[{"raw_affiliation_string":"Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School , Shenzhen 518132, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Shenzhen Bay Laboratory , Shenzhen 518132, China","institution_ids":["https://openalex.org/I4210102541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102758554","display_name":"Fan Jiang","orcid":"https://orcid.org/0000-0001-9511-8877"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Jiang","raw_affiliation_strings":["Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School , Shenzhen 518132, China"],"affiliations":[{"raw_affiliation_string":"Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School , Shenzhen 518132, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104308295","display_name":"Yun\u2010Dong Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210102541","display_name":"Shenzhen Bay Laboratory","ror":"https://ror.org/00sdcjz77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102541"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yun-Dong Wu","raw_affiliation_strings":["College of Chemistry and Molecular Engineering, Peking University , Beijing 100871, China","Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School , Shenzhen 518132, China","Shenzhen Bay Laboratory , Shenzhen 518132, China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry and Molecular Engineering, Peking University , Beijing 100871, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School , Shenzhen 518132, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Shenzhen Bay Laboratory , Shenzhen 518132, China","institution_ids":["https://openalex.org/I4210102541"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5104308295"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210102541"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0804,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.43034399,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"37","issue":"24","first_page":"4712","last_page":"4718"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.6319392919540405},{"id":"https://openalex.org/keywords/phosphate","display_name":"Phosphate","score":0.5824843049049377},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.539669394493103},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5131086111068726},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49764278531074524},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4904439151287079},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40869730710983276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3782345652580261},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.28525102138519287},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2463192641735077},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2021375596523285}],"concepts":[{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.6319392919540405},{"id":"https://openalex.org/C2777132085","wikidata":"https://www.wikidata.org/wiki/Q46220103","display_name":"Phosphate","level":2,"score":0.5824843049049377},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.539669394493103},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5131086111068726},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49764278531074524},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4904439151287079},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40869730710983276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3782345652580261},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.28525102138519287},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2463192641735077},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2021375596523285},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010710","descriptor_name":"Phosphates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010710","descriptor_name":"Phosphates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010710","descriptor_name":"Phosphates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab525","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab525","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34270697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34270697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-156051","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-156051","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G42322103","display_name":null,"funder_award_id":"21933004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8045060084","display_name":null,"funder_award_id":"GXWD20201231165807007-20200812124825001","funder_id":"https://openalex.org/F4320329791","funder_display_name":"Shenzhen Fundamental Research Program"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329791","display_name":"Shenzhen Fundamental Research Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W66443818","https://openalex.org/W1762366815","https://openalex.org/W1969657447","https://openalex.org/W1975748785","https://openalex.org/W1982499456","https://openalex.org/W2001117460","https://openalex.org/W2009339798","https://openalex.org/W2010516785","https://openalex.org/W2033406586","https://openalex.org/W2035077545","https://openalex.org/W2049714877","https://openalex.org/W2054954101","https://openalex.org/W2061103929","https://openalex.org/W2062410139","https://openalex.org/W2064371632","https://openalex.org/W2070159028","https://openalex.org/W2075730114","https://openalex.org/W2090794687","https://openalex.org/W2092157292","https://openalex.org/W2099681431","https://openalex.org/W2100030276","https://openalex.org/W2105668062","https://openalex.org/W2106648157","https://openalex.org/W2107432340","https://openalex.org/W2109553965","https://openalex.org/W2113716571","https://openalex.org/W2116703791","https://openalex.org/W2126374515","https://openalex.org/W2128402268","https://openalex.org/W2130479394","https://openalex.org/W2132395520","https://openalex.org/W2137981491","https://openalex.org/W2138865250","https://openalex.org/W2139064989","https://openalex.org/W2140407975","https://openalex.org/W2140538197","https://openalex.org/W2142678478","https://openalex.org/W2146233784","https://openalex.org/W2149095014","https://openalex.org/W2150603409","https://openalex.org/W2151781780","https://openalex.org/W2153153865","https://openalex.org/W2164088236","https://openalex.org/W2165526004","https://openalex.org/W2166328390","https://openalex.org/W2183050958","https://openalex.org/W2341018731","https://openalex.org/W2474188283","https://openalex.org/W2558889343","https://openalex.org/W2571998636","https://openalex.org/W2617750324","https://openalex.org/W2778809918","https://openalex.org/W2787569132","https://openalex.org/W2790079983","https://openalex.org/W2793534579","https://openalex.org/W2807540482","https://openalex.org/W2887981960","https://openalex.org/W2955341169","https://openalex.org/W3091270580","https://openalex.org/W3092993750"],"related_works":["https://openalex.org/W1485630101","https://openalex.org/W2498017833","https://openalex.org/W2070338563","https://openalex.org/W2139064989","https://openalex.org/W2909293488","https://openalex.org/W2136206204","https://openalex.org/W2025458374","https://openalex.org/W3124243165","https://openalex.org/W2543342371","https://openalex.org/W2329091253"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
