{"id":"https://openalex.org/W3182657857","doi":"https://doi.org/10.1093/bioinformatics/btab506","title":"BtToxin_Digger: a comprehensive and high-throughput pipeline for mining toxin protein genes from Bacillus thuringiensis","display_name":"BtToxin_Digger: a comprehensive and high-throughput pipeline for mining toxin protein genes from Bacillus thuringiensis","publication_year":2021,"publication_date":"2021-07-07","ids":{"openalex":"https://openalex.org/W3182657857","doi":"https://doi.org/10.1093/bioinformatics/btab506","mag":"3182657857","pmid":"https://pubmed.ncbi.nlm.nih.gov/34244720"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab506","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab506","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065749288","display_name":"Hualin Liu","orcid":"https://orcid.org/0000-0002-3630-5522"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hualin Liu","raw_affiliation_strings":["State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-3630-5522","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041604563","display_name":"Jinshui Zheng","orcid":"https://orcid.org/0000-0002-0147-5900"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jinshui Zheng","raw_affiliation_strings":["Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University , Wuhan 430070, China","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-0147-5900","affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080783204","display_name":"Dexin Bo","orcid":"https://orcid.org/0009-0005-4280-1249"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dexin Bo","raw_affiliation_strings":["Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University , Wuhan 430070, China","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100625877","display_name":"Yun Yu","orcid":"https://orcid.org/0000-0001-6003-9423"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Yu","raw_affiliation_strings":["State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084294847","display_name":"Weixing Ye","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weixing Ye","raw_affiliation_strings":["State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060095342","display_name":"Donghai Peng","orcid":"https://orcid.org/0000-0002-4918-2357"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghai Peng","raw_affiliation_strings":["State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002338980","display_name":"Ming Sun","orcid":"https://orcid.org/0000-0001-5465-5983"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming Sun","raw_affiliation_strings":["State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0001-5465-5983","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5002338980","https://openalex.org/A5041604563"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":{"value":3478,"currency":"USD","value_usd":3478},"apc_paid":null,"fwci":1.5665,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.83331126,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"38","issue":"1","first_page":"250","last_page":"251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11075","display_name":"Insect Resistance and Genetics","score":0.9613999724388123,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11075","display_name":"Insect Resistance and Genetics","score":0.9613999724388123,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11515","display_name":"Bacillus and Francisella bacterial research","score":0.014499999582767487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.003100000089034438,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6163767576217651},{"id":"https://openalex.org/keywords/bacillus-thuringiensis","display_name":"Bacillus thuringiensis","score":0.6130655407905579},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5885794758796692},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5449388027191162},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5302369594573975},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5004677772521973},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4741586744785309},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4455394446849823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33572739362716675},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2739499807357788},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22846701741218567},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.15986651182174683}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6163767576217651},{"id":"https://openalex.org/C2779035793","wikidata":"https://www.wikidata.org/wiki/Q310467","display_name":"Bacillus thuringiensis","level":3,"score":0.6130655407905579},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5885794758796692},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5449388027191162},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5302369594573975},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5004677772521973},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4741586744785309},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4455394446849823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33572739362716675},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2739499807357788},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22846701741218567},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.15986651182174683},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000083722","descriptor_name":"Bacillus thuringiensis Toxins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000083722","descriptor_name":"Bacillus thuringiensis Toxins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000083722","descriptor_name":"Bacillus thuringiensis Toxins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001413","descriptor_name":"Bacillus thuringiensis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001413","descriptor_name":"Bacillus thuringiensis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001413","descriptor_name":"Bacillus thuringiensis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab506","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab506","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34244720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34244720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2668571069","display_name":"\u82cf\u4e91\u91d1\u82bd\u80de\u6746\u83ccH-\u8840\u6e05\u578b\u51b3\u5b9a\u7684\u9057\u4f20\u57fa\u7840\u7814\u7a76","funder_award_id":"31770003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2802212568","display_name":null,"funder_award_id":"2017YFD0201201","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4500669601","display_name":"\u82cf\u4e91\u91d1\u82bd\u80de\u6746\u83ccsRNA\u7684\u591a\u6837\u6027\u5206\u6790\u548c\u529f\u80fd\u7814\u7a76","funder_award_id":"31670085","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4503471881","display_name":"\u57fa\u4e8e\u57fa\u56e0\u7ec4\u5b66\u7684\u82bd\u80de\u6746\u83cc\u79d1\u7684\u5206\u7c7b\u3001\u751f\u6001\u4e0e\u8fdb\u5316\u7814\u7a76","funder_award_id":"31970003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W143226139","https://openalex.org/W1969849905","https://openalex.org/W1982640216","https://openalex.org/W2020027019","https://openalex.org/W2065831247","https://openalex.org/W2119671812","https://openalex.org/W2132719404","https://openalex.org/W2138122982","https://openalex.org/W2142678478","https://openalex.org/W2148907834","https://openalex.org/W2150934173","https://openalex.org/W2151252119","https://openalex.org/W2153635508","https://openalex.org/W2171544123","https://openalex.org/W2765745983","https://openalex.org/W2916292618","https://openalex.org/W2946820117","https://openalex.org/W3007951356","https://openalex.org/W3013215697","https://openalex.org/W3041328925","https://openalex.org/W3112105061","https://openalex.org/W4253129904","https://openalex.org/W6780635672","https://openalex.org/W6787175949"],"related_works":["https://openalex.org/W1582369042","https://openalex.org/W2062087578","https://openalex.org/W2084462471","https://openalex.org/W3005493164","https://openalex.org/W3120061932","https://openalex.org/W2216365238","https://openalex.org/W1980181180","https://openalex.org/W2043919938","https://openalex.org/W2417012475","https://openalex.org/W1482850564"],"abstract_inverted_index":{"SUMMARY:":[0],"Bacillus":[1],"thuringiensis":[2],"(Bt)":[3],"has":[4,40],"been":[5,41],"used":[6,19,43,99,128],"as":[7],"the":[8,21,53,78,141,144],"most":[9],"successful":[10],"microbial":[11],"pesticide":[12],"for":[13,20,117],"decades.":[14],"Its":[15],"toxin":[16,63,93,103],"genes":[17,64,104,133],"are":[18,155,167],"development":[22],"of":[23,107,143],"genetically":[24],"modified":[25],"crops":[26],"against":[27],"pests.":[28],"We":[29],"previously":[30],"developed":[31],"a":[32,74,88],"web-based":[33],"insecticidal":[34],"gene":[35],"mining":[36,62,94],"tool":[37,72],"BtToxin_scanner.":[38],"It":[39,96],"frequently":[42],"by":[44,56],"many":[45],"researchers":[46],"worldwide.":[47],"However,":[48],"it":[49,124],"can":[50,97,125],"only":[51],"handle":[52],"genome":[54,109,136],"one":[55,57],"online.":[58,171],"To":[59],"facilitate":[60],"efficiently":[61],"from":[65,105,134],"large-scale":[66,135],"sequence":[67],"data,":[68,112],"we":[69,85],"re-designed":[70],"this":[71],"with":[73,140],"new":[75],"workflow":[76],"and":[77,90,110,113,120,137,152,160],"novel":[79],"bacterial":[80],"pesticidal":[81],"protein":[82],"database.":[83,145],"Here,":[84],"present":[86],"BtToxin_Digger,":[87],"comprehensive":[89],"high-throughput":[91],"Bt":[92,102],"tool.":[95],"be":[98,127],"to":[100,129],"predict":[101],"thousands":[106],"raw":[108],"metagenome":[111,138],"provides":[114],"accurate":[115],"results":[116],"downstream":[118],"analysis":[119],"experiment":[121],"testing.":[122],"Moreover,":[123],"also":[126],"mine":[130],"other":[131],"targeting":[132],"data":[139,166],"replacement":[142],"AVAILABILITY":[146],"AND":[147],"IMPLEMENTATION:":[148],"The":[149],"BtToxin_Digger":[150],"codes":[151],"web":[153],"services":[154],"freely":[156],"available":[157,168],"at":[158,169],"https://github.com/BMBGenomics/BtToxin_Digger":[159],"https://bcam.hzau.edu.cn/BtToxin_Digger,":[161],"respectively.":[162],"SUPPLEMENTARY":[163],"INFORMATION:":[164],"Supplementary":[165],"Bioinformatics":[170]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2021-07-19T00:00:00"}
