{"id":"https://openalex.org/W3182282819","doi":"https://doi.org/10.1093/bioinformatics/btab505","title":"2DProts: database of family-wide protein secondary structure diagrams","display_name":"2DProts: database of family-wide protein secondary structure diagrams","publication_year":2021,"publication_date":"2021-07-05","ids":{"openalex":"https://openalex.org/W3182282819","doi":"https://doi.org/10.1093/bioinformatics/btab505","mag":"3182282819"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab505","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab505","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4599/41641717/btab505.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4599/41641717/btab505.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035392838","display_name":"Ivana Huta\u0159ov\u00e1 Va\u0159ekov\u00e1","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ivana Huta\u0159ov\u00e1 Va\u0159ekov\u00e1","raw_affiliation_strings":["Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","Department of Computer Systems and Communications, Faculty of Informatics, Masaryk University , Brno 602 00, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"Department of Computer Systems and Communications, Faculty of Informatics, Masaryk University , Brno 602 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045553975","display_name":"Jan Huta\u0159","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Huta\u0159","raw_affiliation_strings":["Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060799515","display_name":"Adam Midlik","orcid":"https://orcid.org/0000-0003-0455-2235"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Adam Midlik","raw_affiliation_strings":["Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025266471","display_name":"Vladim\u00edr Horsk\u00fd","orcid":"https://orcid.org/0000-0002-9252-5386"},"institutions":[{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Vladim\u00edr Horsk\u00fd","raw_affiliation_strings":["Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023288377","display_name":"Eva Hladk\u00e1","orcid":null},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Eva Hladk\u00e1","raw_affiliation_strings":["Department of Computer Systems and Communications, Faculty of Informatics, Masaryk University , Brno 602 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Computer Systems and Communications, Faculty of Informatics, Masaryk University , Brno 602 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051424845","display_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","orcid":"https://orcid.org/0000-0002-3840-8760"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Radka Svobodov\u00e1","raw_affiliation_strings":["Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Centre for Structural Biology, CEITEC\u2014Central European Institute of Technology, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049457524","display_name":"Karel Berka","orcid":"https://orcid.org/0000-0001-9472-2589"},"institutions":[{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Karel Berka","raw_affiliation_strings":["Department of Physical Chemistry, Faculty of Science, Palack\u00fd University Olomouc , Olomouc 771 46, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science, Palack\u00fd University Olomouc , Olomouc 771 46, Czech Republic","institution_ids":["https://openalex.org/I70703428"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5049457524","https://openalex.org/A5051424845"],"corresponding_institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417","https://openalex.org/I70703428"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3986,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.53044392,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"37","issue":"23","first_page":"4599","last_page":"4601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6990465521812439},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.6900820136070251},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.585281491279602},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5690125226974487},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5310155749320984},{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.46743765473365784},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.46681782603263855},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45374637842178345},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4444267749786377},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4108130931854248},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3411528170108795},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3344283103942871},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1588737964630127}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6990465521812439},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.6900820136070251},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.585281491279602},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5690125226974487},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5310155749320984},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.46743765473365784},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.46681782603263855},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45374637842178345},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4444267749786377},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4108130931854248},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3411528170108795},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3344283103942871},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1588737964630127},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab505","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab505","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4599/41641717/btab505.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8652034","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8652034","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab505","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab505","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4599/41641717/btab505.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5663357039","display_name":null,"funder_award_id":"CZ.02.1.01/0.0/0.0/16_013/0001777","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G954903593","display_name":null,"funder_award_id":"LM2018131","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3182282819.pdf","grobid_xml":"https://content.openalex.org/works/W3182282819.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2107521254","https://openalex.org/W2151687360","https://openalex.org/W2168332319","https://openalex.org/W2934775469","https://openalex.org/W2978232173","https://openalex.org/W2982977147","https://openalex.org/W3106745904","https://openalex.org/W3166375275","https://openalex.org/W6769535376"],"related_works":["https://openalex.org/W2888529970","https://openalex.org/W4229928981","https://openalex.org/W2098020585","https://openalex.org/W2030847578","https://openalex.org/W2183795482","https://openalex.org/W2782111585","https://openalex.org/W4362498705","https://openalex.org/W2952657391","https://openalex.org/W229543724","https://openalex.org/W4210681306"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"Secondary":[2],"structures":[3],"provide":[4,130],"a":[5,58,105,134],"deep":[6],"insight":[7],"into":[8,147],"the":[9,43,77,90,115],"protein":[10,19,30,107,136],"architecture.":[11],"They":[12],"can":[13],"serve":[14],"for":[15,42,86],"comparison":[16],"between":[17],"individual":[18],"family":[20,69],"members.":[21],"The":[22,156,163],"most":[23],"straightforward":[24],"way":[25],"how":[26],"to":[27],"deal":[28],"with":[29],"secondary":[31,82,119,138],"structure":[32,83,120],"is":[33,141,145],"its":[34],"visualization":[35],"using":[36],"2D":[37,46,53,62,84,99,127],"diagrams.":[38],"Several":[39],"software":[40],"tools":[41],"generation":[44],"of":[45,64,118,133],"diagrams":[47,54,63,85,100],"were":[48],"developed.":[49],"Unfortunately,":[50],"they":[51,110],"create":[52],"based":[55,103],"on":[56,104],"only":[57],"single":[59],"protein.":[60],"Therefore,":[61],"two":[65],"proteins":[66,94],"from":[67,89,95],"one":[68],"markedly":[70],"differ.":[71],"For":[72],"this":[73],"reason,":[74],"we":[75],"developed":[76],"2DProts":[78,123,140],"database,":[79],"which":[80,129],"contains":[81,125],"all":[87,93],"domains":[88],"CATH":[91],"and":[92,109,144,150],"PDB":[96],"databases.":[97],"These":[98],"are":[101,173],"generated":[102],"whole":[106,135],"family,":[108],"also":[111],"consider":[112],"information":[113,170],"about":[114],"3D":[116],"arrangement":[117],"elements.":[121],"Moreover,":[122],"database":[124,164],"multiple":[126],"diagrams,":[128],"an":[131],"overview":[132],"family's":[137],"structures.":[139],"updated":[142],"weekly":[143],"integrated":[146],"CATH.":[148],"Availability":[149],"Implementation":[151],"Freely":[152],"accessible":[153],"at":[154,175],"https://2dprots.ncbr.muni.cz.":[155],"web":[157],"interface":[158],"was":[159,165],"implemented":[160,166],"in":[161,167],"JavaScript.":[162],"Python.":[168],"Supplementary":[169,171],"data":[172],"available":[174],"Bioinformatics":[176],"online.":[177]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2021-07-19T00:00:00"}
