{"id":"https://openalex.org/W3175582711","doi":"https://doi.org/10.1093/bioinformatics/btab481","title":"ELIXIR: providing a sustainable infrastructure for life science data at European scale","display_name":"ELIXIR: providing a sustainable infrastructure for life science data at European scale","publication_year":2021,"publication_date":"2021-06-25","ids":{"openalex":"https://openalex.org/W3175582711","doi":"https://doi.org/10.1093/bioinformatics/btab481","mag":"3175582711","pmid":"https://pubmed.ncbi.nlm.nih.gov/34175941"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/16/2506/39949737/btab481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/16/2506/39949737/btab481.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080927998","display_name":"Jennifer Harrow","orcid":"https://orcid.org/0000-0003-0338-3070"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jennifer Harrow","raw_affiliation_strings":["ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075192784","display_name":"Rachel Drysdale","orcid":"https://orcid.org/0000-0003-3037-0216"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rachel Drysdale","raw_affiliation_strings":["ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085947375","display_name":"Andrew Smith","orcid":"https://orcid.org/0000-0002-6025-9271"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrew Smith","raw_affiliation_strings":["ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044075177","display_name":"Susanna Repo","orcid":"https://orcid.org/0000-0003-3488-4767"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Susanna Repo","raw_affiliation_strings":["ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032021326","display_name":"Jerry Lanfear","orcid":"https://orcid.org/0000-0002-8007-5568"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jerry Lanfear","raw_affiliation_strings":["ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010916394","display_name":"Niklas Blomberg","orcid":"https://orcid.org/0000-0003-4155-5910"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Niklas Blomberg","raw_affiliation_strings":["ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"ELIXIR Hub, South Building, Wellcome Genome Campus, Hinxton , Cambridge CB10 1SD, UK","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5010916394"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":13.3714,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.98763929,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"37","issue":"16","first_page":"2506","last_page":"2511"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/elixir","display_name":"Elixir (programming language)","score":0.8867623805999756},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6318325996398926},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4588805139064789},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4450852572917938},{"id":"https://openalex.org/keywords/environmental-resource-management","display_name":"Environmental resource management","score":0.33553943037986755},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.23236575722694397},{"id":"https://openalex.org/keywords/environmental-science","display_name":"Environmental science","score":0.16808807849884033},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.15100249648094177}],"concepts":[{"id":"https://openalex.org/C103472402","wikidata":"https://www.wikidata.org/wiki/Q5362035","display_name":"Elixir (programming language)","level":2,"score":0.8867623805999756},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6318325996398926},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4588805139064789},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4450852572917938},{"id":"https://openalex.org/C107826830","wikidata":"https://www.wikidata.org/wiki/Q929380","display_name":"Environmental resource management","level":1,"score":0.33553943037986755},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.23236575722694397},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.16808807849884033},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.15100249648094177},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/16/2506/39949737/btab481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34175941","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34175941","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8388016","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8388016","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/16/2506/39949737/btab481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6100000143051147,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G6574697119","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3175582711.pdf","grobid_xml":"https://content.openalex.org/works/W3175582711.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1831723870","https://openalex.org/W2012034410","https://openalex.org/W2052515963","https://openalex.org/W2128763542","https://openalex.org/W2171895522","https://openalex.org/W2254819570","https://openalex.org/W2285144687","https://openalex.org/W2302501749","https://openalex.org/W2525035644","https://openalex.org/W2581121438","https://openalex.org/W2592562685","https://openalex.org/W2604622795","https://openalex.org/W2726568519","https://openalex.org/W2732379437","https://openalex.org/W2735641780","https://openalex.org/W2765134536","https://openalex.org/W2768452060","https://openalex.org/W2770647690","https://openalex.org/W2806878304","https://openalex.org/W2809890605","https://openalex.org/W2885437164","https://openalex.org/W2903258100","https://openalex.org/W2919288702","https://openalex.org/W2946315735","https://openalex.org/W2950890929","https://openalex.org/W2951491155","https://openalex.org/W2971177113","https://openalex.org/W2999321803","https://openalex.org/W3006186992","https://openalex.org/W3104117862","https://openalex.org/W3127613064","https://openalex.org/W3160024651","https://openalex.org/W4229527776","https://openalex.org/W4248961416","https://openalex.org/W6696105951","https://openalex.org/W6751750095","https://openalex.org/W6757076912","https://openalex.org/W6763969611","https://openalex.org/W6764196727","https://openalex.org/W6785464433"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3160690796","https://openalex.org/W2945781956","https://openalex.org/W2966875286","https://openalex.org/W2900692317","https://openalex.org/W3003405015","https://openalex.org/W4383176220","https://openalex.org/W2749889710","https://openalex.org/W4313486398"],"abstract_inverted_index":{"In":[0],"2012,":[1],"the":[2,12,32,48,88],"Digital":[3],"Universe":[4],"Study":[5],"reported":[6],"that":[7,25,44],"'less":[8],"than":[9,19],"1%":[10],"of":[11,54,57,85],"World's":[13],"data":[14,36,42,62,100,114,120,128],"is":[15,21,40,45,101],"analyzed":[16],"and":[17,23,51,65,74,95,103,130],"less":[18],"20%":[20],"protected'":[22],"recommended":[24],"management":[26],"plans":[27],"were":[28],"needed":[29],"to":[30,71],"harness":[31],"potential":[33],"within":[34],"these":[35,61],"streams":[37],"Life":[38],"science":[39,43],"a":[41,68,133],"dependent":[46],"on":[47],"generation,":[49],"sharing":[50,131],"integrative":[52],"analysis":[53],"vast":[55],"quantities":[56],"digital":[58],"data.":[59],"However,":[60],"are":[63,77,132],"complex":[64],"fragmented,":[66],"creating":[67],"significant":[69],"barrier":[70],"their":[72],"integration":[73],"reuse.":[75],"Data":[76],"generated":[78],"for":[79],"different":[80],"research":[81],"purposes":[82],"at":[83],"thousands":[84],"facilities":[86],"across":[87],"world,":[89],"with":[90],"diverse":[91],"formats,":[92],"annotations,":[93],"methodologies":[94],"metadata":[96],"standards.":[97],"Interpreting":[98],"this":[99,136],"difficult":[102],"often":[104],"involves":[105],"integrating":[106],"very":[107],"large":[108],"datasets":[109],"from":[110],"multiple":[111],"sources.":[112],"Certain":[113],"types":[115],"such":[116],"as":[117],"sensitive":[118],"human":[119],"archived":[121],"under":[122],"controlled":[123],"access":[124],"require":[125],"protection,":[126],"so":[127],"federation":[129],"challenge":[134],"in":[135],"context":[137]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":3}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
