{"id":"https://openalex.org/W3173363013","doi":"https://doi.org/10.1093/bioinformatics/btab480","title":"PolarProtPred: predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning","display_name":"PolarProtPred: predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning","publication_year":2021,"publication_date":"2021-06-28","ids":{"openalex":"https://openalex.org/W3173363013","doi":"https://doi.org/10.1093/bioinformatics/btab480","mag":"3173363013","pmid":"https://pubmed.ncbi.nlm.nih.gov/34185052"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab480","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4328/41641770/btab480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4328/41641770/btab480.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088152168","display_name":"L\u00e1szl\u00f3 Dobson","orcid":"https://orcid.org/0000-0003-2765-3872"},"institutions":[{"id":"https://openalex.org/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https://ror.org/03zwxja46","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4387152226","https://openalex.org/I80251312"]},{"id":"https://openalex.org/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https://ror.org/04t4pws42","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210151515","https://openalex.org/I4387152226","https://openalex.org/I80251312"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Laszlo Dobson","raw_affiliation_strings":["Institute of Enzymology, Research Centre for Natural Sciences , Budapest 1117, Hungary","Structural and Computational Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Enzymology, Research Centre for Natural Sciences , Budapest 1117, Hungary","institution_ids":["https://openalex.org/I4210151515","https://openalex.org/I80251312"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany","institution_ids":["https://openalex.org/I4210153543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081208395","display_name":"Andr\u00e1s Zeke","orcid":"https://orcid.org/0000-0002-5229-8617"},"institutions":[{"id":"https://openalex.org/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https://ror.org/03zwxja46","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4387152226","https://openalex.org/I80251312"]},{"id":"https://openalex.org/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https://ror.org/04t4pws42","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210151515","https://openalex.org/I4387152226","https://openalex.org/I80251312"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Andr\u00e1s Zeke","raw_affiliation_strings":["Institute of Enzymology, Research Centre for Natural Sciences , Budapest 1117, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Enzymology, Research Centre for Natural Sciences , Budapest 1117, Hungary","institution_ids":["https://openalex.org/I4210151515","https://openalex.org/I80251312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025649527","display_name":"G\u00e1bor Tusn\u00e1dy","orcid":"https://orcid.org/0000-0001-8105-0285"},"institutions":[{"id":"https://openalex.org/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https://ror.org/04t4pws42","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210151515","https://openalex.org/I4387152226","https://openalex.org/I80251312"]},{"id":"https://openalex.org/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https://ror.org/03zwxja46","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4387152226","https://openalex.org/I80251312"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"G\u00e1bor E Tusn\u00e1dy","raw_affiliation_strings":["Institute of Enzymology, Research Centre for Natural Sciences , Budapest 1117, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Enzymology, Research Centre for Natural Sciences , Budapest 1117, Hungary","institution_ids":["https://openalex.org/I4210151515","https://openalex.org/I80251312"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025649527"],"corresponding_institution_ids":["https://openalex.org/I4210151515","https://openalex.org/I80251312"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0804,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.42732147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"37","issue":"23","first_page":"4328","last_page":"4335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.7378137707710266},{"id":"https://openalex.org/keywords/transporter","display_name":"Transporter","score":0.6957956552505493},{"id":"https://openalex.org/keywords/epithelial-polarity","display_name":"Epithelial polarity","score":0.6453028321266174},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.6298250555992126},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.5683704018592834},{"id":"https://openalex.org/keywords/cell-polarity","display_name":"Cell polarity","score":0.5175037384033203},{"id":"https://openalex.org/keywords/polarity","display_name":"Polarity (international relations)","score":0.5056266784667969},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4947966933250427},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.494023859500885},{"id":"https://openalex.org/keywords/apical-membrane","display_name":"Apical membrane","score":0.47074729204177856},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.4682881236076355},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.45804399251937866},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.306792676448822},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2366178333759308},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21289315819740295}],"concepts":[{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.7378137707710266},{"id":"https://openalex.org/C149011108","wikidata":"https://www.wikidata.org/wiki/Q652985","display_name":"Transporter","level":3,"score":0.6957956552505493},{"id":"https://openalex.org/C39587587","wikidata":"https://www.wikidata.org/wiki/Q5383698","display_name":"Epithelial polarity","level":3,"score":0.6453028321266174},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.6298250555992126},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.5683704018592834},{"id":"https://openalex.org/C49353375","wikidata":"https://www.wikidata.org/wiki/Q189100","display_name":"Cell polarity","level":3,"score":0.5175037384033203},{"id":"https://openalex.org/C2777361361","wikidata":"https://www.wikidata.org/wiki/Q1112585","display_name":"Polarity (international relations)","level":3,"score":0.5056266784667969},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4947966933250427},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.494023859500885},{"id":"https://openalex.org/C3018436504","wikidata":"https://www.wikidata.org/wiki/Q29548","display_name":"Apical membrane","level":3,"score":0.47074729204177856},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.4682881236076355},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.45804399251937866},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.306792676448822},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2366178333759308},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21289315819740295}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004847","descriptor_name":"Epithelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004847","descriptor_name":"Epithelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004847","descriptor_name":"Epithelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab480","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4328/41641770/btab480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34185052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34185052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8384406","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8384406","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab480","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/23/4328/41641770/btab480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G1963288954","display_name":null,"funder_award_id":"LP2012-35","funder_id":"https://openalex.org/F4320307844","funder_display_name":"European Molecular Biology Organization"},{"id":"https://openalex.org/G8534363223","display_name":null,"funder_award_id":"STF-8784","funder_id":"https://openalex.org/F4320307844","funder_display_name":"European Molecular Biology Organization"}],"funders":[{"id":"https://openalex.org/F4320307844","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3173363013.pdf","grobid_xml":"https://content.openalex.org/works/W3173363013.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W143238282","https://openalex.org/W213218024","https://openalex.org/W1136620495","https://openalex.org/W1559770280","https://openalex.org/W1786434256","https://openalex.org/W1925289396","https://openalex.org/W1967737783","https://openalex.org/W1974944557","https://openalex.org/W1986959366","https://openalex.org/W2018440302","https://openalex.org/W2023333666","https://openalex.org/W2028903194","https://openalex.org/W2030662833","https://openalex.org/W2051558349","https://openalex.org/W2061900190","https://openalex.org/W2086734383","https://openalex.org/W2092296126","https://openalex.org/W2098694680","https://openalex.org/W2121936687","https://openalex.org/W2127322768","https://openalex.org/W2130801954","https://openalex.org/W2148190721","https://openalex.org/W2150536616","https://openalex.org/W2150853746","https://openalex.org/W2170477767","https://openalex.org/W2266458663","https://openalex.org/W2330547698","https://openalex.org/W2404361139","https://openalex.org/W2501196855","https://openalex.org/W2581606500","https://openalex.org/W2588164239","https://openalex.org/W2730472814","https://openalex.org/W2806884808","https://openalex.org/W2888874973","https://openalex.org/W2903429956","https://openalex.org/W2911928655","https://openalex.org/W2912990441","https://openalex.org/W2946836651","https://openalex.org/W2967499662","https://openalex.org/W2971589300","https://openalex.org/W2982432839","https://openalex.org/W2988357750","https://openalex.org/W3016242752","https://openalex.org/W3027042213","https://openalex.org/W3030681709","https://openalex.org/W3103338445","https://openalex.org/W3136918052","https://openalex.org/W6605818608","https://openalex.org/W6770400242"],"related_works":["https://openalex.org/W2115583685","https://openalex.org/W2674928757","https://openalex.org/W1987971027","https://openalex.org/W2046047219","https://openalex.org/W2027331638","https://openalex.org/W3041113997","https://openalex.org/W3173363013","https://openalex.org/W2334273790","https://openalex.org/W2164862805","https://openalex.org/W2213837941"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
