{"id":"https://openalex.org/W3176193173","doi":"https://doi.org/10.1093/bioinformatics/btab478","title":"BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud","display_name":"BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud","publication_year":2021,"publication_date":"2021-06-28","ids":{"openalex":"https://openalex.org/W3176193173","doi":"https://doi.org/10.1093/bioinformatics/btab478","mag":"3176193173","pmid":"https://pubmed.ncbi.nlm.nih.gov/34185062"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab478","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab478","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100679185","display_name":"Sungjoon Park","orcid":"https://orcid.org/0000-0003-2023-9433"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sungjoon Park","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University, Seoul 08840, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University, Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040041536","display_name":"Dohoon Lee","orcid":"https://orcid.org/0000-0003-2163-5489"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dohoon Lee","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08840, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101957170","display_name":"Youngkuk Kim","orcid":"https://orcid.org/0000-0002-1680-7007"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Youngkuk Kim","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University, Seoul 08840, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University, Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101655230","display_name":"Sangsoo Lim","orcid":"https://orcid.org/0000-0003-1737-6242"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sangsoo Lim","raw_affiliation_strings":["Bioinformatics Institute, Seoul National University , Seoul 08840, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, Seoul National University , Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101608081","display_name":"Heejoon Chae","orcid":"https://orcid.org/0000-0002-0960-5829"},"institutions":[{"id":"https://openalex.org/I31766871","display_name":"Sookmyung Women's University","ror":"https://ror.org/00vvvt117","country_code":"KR","type":"education","lineage":["https://openalex.org/I31766871"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Heejoon Chae","raw_affiliation_strings":["Division of Computer Science, Sookmyung Women\u2019s University , Seoul 04310, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0002-0960-5829","affiliations":[{"raw_affiliation_string":"Division of Computer Science, Sookmyung Women\u2019s University , Seoul 04310, Republic of Korea","institution_ids":["https://openalex.org/I31766871"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100460439","display_name":"\ufeffSun Kim","orcid":"https://orcid.org/0000-0001-5385-9546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sun Kim","raw_affiliation_strings":["Bioinformatics Institute, Seoul National University , Seoul 08840, Republic of Korea","Institute of Engineering Research, Seoul National University , Seoul 08840, Republic of Korea","Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08840, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0001-5385-9546","affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, Seoul National University , Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Institute of Engineering Research, Seoul National University , Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08840, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100460439"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":{"value":3478,"currency":"USD","value_usd":3478},"apc_paid":null,"fwci":0.5544,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.5596496,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"38","issue":"1","first_page":"275","last_page":"277"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.23720000684261322,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.23720000684261322,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.16609999537467957,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.14980000257492065,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.9192983508110046},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6692461967468262},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.5812856554985046},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4743049144744873},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4695102870464325},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.45232611894607544},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4465833306312561},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4391297399997711},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3383232355117798},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3189457058906555},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10262754559516907}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.9192983508110046},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6692461967468262},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.5812856554985046},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4743049144744873},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4695102870464325},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.45232611894607544},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4465833306312561},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4391297399997711},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3383232355117798},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3189457058906555},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10262754559516907}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab478","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab478","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34185062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34185062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G5762384480","display_name":null,"funder_award_id":"NRF- 2014M3C9A3063541","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"}],"funders":[{"id":"https://openalex.org/F4320322107","display_name":"Korea Health Industry Development Institute","ror":"https://ror.org/00fdzyk40"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1977033469","https://openalex.org/W2015182193","https://openalex.org/W2149109760","https://openalex.org/W2158485828","https://openalex.org/W2170490448","https://openalex.org/W2489669160","https://openalex.org/W2553517216","https://openalex.org/W2553677484","https://openalex.org/W2944727022","https://openalex.org/W4229705470"],"related_works":["https://openalex.org/W4226103442","https://openalex.org/W2999563835","https://openalex.org/W2068142083","https://openalex.org/W2581299237","https://openalex.org/W2071084184","https://openalex.org/W2121123734","https://openalex.org/W2470631360","https://openalex.org/W2159063798","https://openalex.org/W4220901673","https://openalex.org/W2042445733"],"abstract_inverted_index":{"MOTIVATION:":[0],"Multi-omics":[1],"data":[2,13,47,66,86,98,108,148],"in":[3,19,27,94,109],"molecular":[4],"biology":[5],"has":[6],"accumulated":[7],"rapidly":[8],"over":[9],"the":[10,43,49,101],"years.":[11],"Such":[12],"contains":[14],"valuable":[15],"information":[16],"for":[17,34],"research":[18,26,39,123],"medicine":[20,28],"and":[21,29,48,72,76,99,135,139],"drug":[22,30],"discovery.":[23],"Unfortunately,":[24],"data-driven":[25],"discovery":[31],"is":[32],"challenging":[33],"a":[35,58],"majority":[36],"of":[37,46,51,64,96,127,137],"small":[38,122],"labs":[40,124],"due":[41],"to":[42,70,89,105],"large":[44],"volume":[45],"complexity":[50],"analysis":[52,63,93,126],"pipeline.":[53],"RESULTS:":[54],"We":[55,115],"present":[56],"BioVLAB-Cancer-Pharmacogenomics,":[57],"bioinformatics":[59],"system":[60,83,119],"that":[61,117],"facilitates":[62],"multi-omics":[65,85,129],"from":[67],"breast":[68],"cancer":[69],"analyze":[71],"investigate":[73],"intratumor":[74],"heterogeneity":[75,92],"pharmacogenomics":[77],"on":[78],"Amazon":[79],"Web":[80],"Services.":[81],"Our":[82],"takes":[84],"as":[87],"input":[88],"perform":[90,125],"tumor":[91,102,128],"terms":[95],"TCGA":[97],"deconvolve-and-match":[100],"gene":[103],"expression":[104],"cell":[106],"line":[107],"CCLE":[110],"using":[111],"DNA":[112],"methylation":[113],"profiles.":[114],"believe":[116],"our":[118],"can":[120],"help":[121],"without":[130],"worrying":[131],"about":[132],"computational":[133],"infrastructure":[134],"maintenance":[136],"databases":[138],"tools.":[140],"AVAILABILITY":[141],"AND":[142],"IMPLEMENTATION:":[143],"http://biohealth.snu.ac.kr/software/biovlab_cancer_pharmacogenomics.":[144],"SUPPLEMENTARY":[145],"INFORMATION:":[146],"Supplementary":[147],"are":[149],"available":[150],"at":[151],"Bioinformatics":[152],"online.":[153]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2025-10-10T00:00:00"}
