{"id":"https://openalex.org/W3183032064","doi":"https://doi.org/10.1093/bioinformatics/btab465","title":"mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes","display_name":"mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes","publication_year":2021,"publication_date":"2021-07-09","ids":{"openalex":"https://openalex.org/W3183032064","doi":"https://doi.org/10.1093/bioinformatics/btab465","mag":"3183032064","pmid":"https://pubmed.ncbi.nlm.nih.gov/34260698"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab465","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab465","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/270/41891061/btab465.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/270/41891061/btab465.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081393751","display_name":"Guillem Salazar","orcid":"https://orcid.org/0000-0002-9786-1493"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Guillem Salazar","raw_affiliation_strings":["Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Z\u00fcrich , 8093 Z\u00fcrich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Z\u00fcrich , 8093 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006162777","display_name":"Hans\u2010Joachim Ruscheweyh","orcid":"https://orcid.org/0000-0001-7473-6086"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hans-Joachim Ruscheweyh","raw_affiliation_strings":["Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Z\u00fcrich , 8093 Z\u00fcrich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Z\u00fcrich , 8093 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043828779","display_name":"Falk Hildebrand","orcid":"https://orcid.org/0000-0002-0078-8948"},"institutions":[{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Falk Hildebrand","raw_affiliation_strings":["Department of Digital Biology, Earlham Institute, NR4 7UZ Norwich, UK","Department of Gut Microbes and Health, Quadram Institute Bioscience, NR4 7UQ Norwich, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Digital Biology, Earlham Institute, NR4 7UZ Norwich, UK","institution_ids":["https://openalex.org/I4210100714"]},{"raw_affiliation_string":"Department of Gut Microbes and Health, Quadram Institute Bioscience, NR4 7UQ Norwich, UK","institution_ids":["https://openalex.org/I3018370718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005715181","display_name":"Silvia G. Acinas","orcid":"https://orcid.org/0000-0002-3439-0428"},"institutions":[{"id":"https://openalex.org/I4210151560","display_name":"Institut de Ci\u00e8ncies del Mar","ror":"https://ror.org/05ect0289","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210151560"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Silvia G Acinas","raw_affiliation_strings":["Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM)-CSIC , 08003 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM)-CSIC , 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210151560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027144722","display_name":"Shinichi Sunagawa","orcid":"https://orcid.org/0000-0003-3065-0314"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Shinichi Sunagawa","raw_affiliation_strings":["Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Z\u00fcrich , 8093 Z\u00fcrich, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-3065-0314","affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Z\u00fcrich , 8093 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5027144722"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1115,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.76618664,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"1","first_page":"270","last_page":"272"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7365000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7365000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.09160000085830688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.08060000091791153,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.654303252696991},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5858950018882751},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5699781775474548},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5408935546875},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5206072330474854},{"id":"https://openalex.org/keywords/reference-genes","display_name":"Reference genes","score":0.4340077042579651},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.12011584639549255}],"concepts":[{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.654303252696991},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5858950018882751},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5699781775474548},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5408935546875},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5206072330474854},{"id":"https://openalex.org/C2779148672","wikidata":"https://www.wikidata.org/wiki/Q25326537","display_name":"Reference genes","level":4,"score":0.4340077042579651},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.12011584639549255}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btab465","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab465","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/270/41891061/btab465.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34260698","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34260698","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/523287","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/523287","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, 38 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:digital.csic.es:10261/293159","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/293159","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:8696115","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8696115","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"doi:10.3929/ethz-b-000523287","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000523287","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab465","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab465","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/270/41891061/btab465.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G209944930","display_name":"Changes in gut microbe-host interactions and their impact beyond the gut","funder_award_id":"BBS/E/F/000PR10355","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3302311078","display_name":null,"funder_award_id":"BBS/E/F/000PR10353","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3804953341","display_name":"Computational Developments","funder_award_id":"BBS/E/T/000PR9817","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5428449280","display_name":"Signatures of Domestication and Adaptation","funder_award_id":"BBS/E/T/000PR9818","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5750525336","display_name":null,"funder_award_id":"BBS/E/T/000PR9817","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6624294731","display_name":"Resolving ocean microbial micro-diversity and its environmental drivers at global scale","funder_award_id":"184955","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G7305703845","display_name":null,"funder_award_id":"BBS/E/F/000PR10355","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7666092790","display_name":null,"funder_award_id":"205321","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G7820999220","display_name":"NCCR Microbiomes: Microbial communities in health and environment","funder_award_id":"180575","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8357017033","display_name":null,"funder_award_id":"BBS/E/T/000PR9818","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8391779012","display_name":"Determinants of microbe-host responses in the gut across life","funder_award_id":"BBS/E/F/000PR10353","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G965081974","display_name":null,"funder_award_id":"PHRT 521","funder_id":"https://openalex.org/F4320321652","funder_display_name":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320321652","display_name":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich","ror":"https://ror.org/05a28rw58"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3183032064.pdf","grobid_xml":"https://content.openalex.org/works/W3183032064.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1510306455","https://openalex.org/W1971536609","https://openalex.org/W2034285706","https://openalex.org/W2072970694","https://openalex.org/W2084443943","https://openalex.org/W2095132285","https://openalex.org/W2108718991","https://openalex.org/W2137107630","https://openalex.org/W2258031998","https://openalex.org/W2401404581","https://openalex.org/W2538509698","https://openalex.org/W2566386785","https://openalex.org/W2748559568","https://openalex.org/W2800231416","https://openalex.org/W2963276645","https://openalex.org/W3135022255"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W309631609","https://openalex.org/W4390202022","https://openalex.org/W3092788052","https://openalex.org/W2011234445","https://openalex.org/W2271925893","https://openalex.org/W2620236525","https://openalex.org/W2354452412","https://openalex.org/W2207832617","https://openalex.org/W2136813237"],"abstract_inverted_index":{"Profiling":[0],"the":[1,9,30,43,93,105,126],"taxonomic":[2,38,79,83],"composition":[3],"of":[4,11,45,54],"microbial":[5],"communities":[6],"commonly":[7],"involves":[8],"classification":[10,22],"ribosomal":[12,57],"RNA":[13,58],"gene":[14],"fragments.":[15],"As":[16],"a":[17,37,87],"trade-off":[18],"to":[19,29,49],"maintain":[20],"high":[21],"accuracy,":[23],"existing":[24],"tools":[25,99],"are":[26,145,154,164],"typically":[27],"limited":[28],"genus":[31,94],"level.":[32,128],"Here,":[33],"we":[34],"present":[35],"mTAGs,":[36],"profiling":[39],"tool":[40,134],"that":[41,64],"implements":[42],"alignment":[44],"metagenomic":[46],"sequencing":[47,67],"reads":[48],"degenerate":[50],"consensus":[51],"reference":[52],"sequences":[53],"small":[55],"subunit":[56],"genes.":[59],"It":[60],"uses":[61],"DNA":[62],"fragments,":[63],"is,":[65],"paired-end":[66],"reads,":[68],"as":[69,104],"count":[70],"units":[71,84],"and":[72,115,143],"provides":[73],"relative":[74],"abundance":[75],"profiles":[76],"at":[77,125,158,166],"multiple":[78],"ranks,":[80],"including":[81],"operational":[82],"based":[85],"on":[86],"97%":[88],"sequence":[89],"identity":[90],"cutoff.":[91],"At":[92],"rank,":[95],"mTAGs":[96,135],"outperformed":[97],"other":[98],"across":[100,110],"several":[101],"metrics,":[102],"such":[103],"F1":[106],"score":[107],"by":[108],">11%":[109],"data":[111,150,163],"from":[112],"different":[113],"environments,":[114],"achieved":[116],"competitive":[117],"(F1":[118],"score)":[119],"or":[120],"better":[121],"results":[122],"(Bray-Curtis":[123],"dissimilarity)":[124],"sub-genus":[127],"AVAILABILITY":[129],"AND":[130],"IMPLEMENTATION:":[131],"The":[132,140,149],"software":[133],"is":[136],"implemented":[137],"in":[138,156],"Python.":[139],"source":[141],"code":[142],"binaries":[144],"freely":[146],"available":[147,155,165],"(https://github.com/SushiLab/mTAGs).":[148],"underlying":[151],"this":[152],"article":[153],"Zenodo,":[157],"https://doi.org/10.5281/zenodo.4352762.":[159],"SUPPLEMENTARY":[160],"INFORMATION:":[161],"Supplementary":[162],"Bioinformatics":[167],"online.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2025-10-10T00:00:00"}