{"id":"https://openalex.org/W3167871643","doi":"https://doi.org/10.1093/bioinformatics/btab446","title":"ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity","display_name":"ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity","publication_year":2021,"publication_date":"2021-06-15","ids":{"openalex":"https://openalex.org/W3167871643","doi":"https://doi.org/10.1093/bioinformatics/btab446","mag":"3167871643","pmid":"https://pubmed.ncbi.nlm.nih.gov/34132766"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab446","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab446","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007102408","display_name":"Sebastiaan Valkiers","orcid":"https://orcid.org/0000-0002-4940-1310"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sebastiaan Valkiers","raw_affiliation_strings":["Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","Antwerp Unit for Data Analysis and Computation in Immunology and Sequencing (AUDACIS), Interdepartmental Consortium, University of Antwerp, 2020 Antwerp, Belgium"],"affiliations":[{"raw_affiliation_string":"Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Antwerp Unit for Data Analysis and Computation in Immunology and Sequencing (AUDACIS), Interdepartmental Consortium, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038660929","display_name":"Max Van Houcke","orcid":"https://orcid.org/0000-0001-5473-7428"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Max Van Houcke","raw_affiliation_strings":["Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium"],"affiliations":[{"raw_affiliation_string":"Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024445778","display_name":"Kris Laukens","orcid":"https://orcid.org/0000-0002-8217-2564"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Kris Laukens","raw_affiliation_strings":["Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","Antwerp Unit for Data Analysis and Computation in Immunology and Sequencing (AUDACIS), Interdepartmental Consortium, University of Antwerp, 2020 Antwerp, Belgium"],"affiliations":[{"raw_affiliation_string":"Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Antwerp Unit for Data Analysis and Computation in Immunology and Sequencing (AUDACIS), Interdepartmental Consortium, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024401144","display_name":"Pieter Meysman","orcid":"https://orcid.org/0000-0001-5903-633X"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Pieter Meysman","raw_affiliation_strings":["Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","Antwerp Unit for Data Analysis and Computation in Immunology and Sequencing (AUDACIS), Interdepartmental Consortium, University of Antwerp, 2020 Antwerp, Belgium"],"affiliations":[{"raw_affiliation_string":"Adrem Data Lab, Department of Computer Science, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Antwerp Unit for Data Analysis and Computation in Immunology and Sequencing (AUDACIS), Interdepartmental Consortium, University of Antwerp, 2020 Antwerp, Belgium","institution_ids":["https://openalex.org/I149213910"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024401144"],"corresponding_institution_ids":["https://openalex.org/I149213910"],"apc_list":null,"apc_paid":null,"fwci":4.6362,"has_fulltext":false,"cited_by_count":78,"citation_normalized_percentile":{"value":0.96204358,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"37","issue":"24","first_page":"4865","last_page":"4867"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7525988221168518},{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.7243373990058899},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.69921875},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6757650375366211},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5305997133255005},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.49468061327934265},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.485578715801239},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.45948326587677},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.45273536443710327},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41654402017593384},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4083535075187683},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26079392433166504},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.25530922412872314},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24750736355781555},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19921669363975525},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18449729681015015},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1382634937763214}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7525988221168518},{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.7243373990058899},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.69921875},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6757650375366211},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5305997133255005},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.49468061327934265},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.485578715801239},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.45948326587677},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.45273536443710327},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41654402017593384},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4083535075187683},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26079392433166504},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.25530922412872314},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24750736355781555},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19921669363975525},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18449729681015015},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1382634937763214},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab446","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab446","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34132766","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34132766","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:c:irua:178850","is_oa":false,"landing_page_url":"https://hdl.handle.net/10067/1788500151162165141","pdf_url":null,"source":{"id":"https://openalex.org/S4306401849","display_name":"Institutional Repository University of Antwerp (University of Antwerp)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149213910","host_organization_name":"University of Antwerp","host_organization_lineage":["https://openalex.org/I149213910"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4050252142","display_name":null,"funder_award_id":"1S40321N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1994359525","https://openalex.org/W2124166542","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2738063824","https://openalex.org/W2890742557","https://openalex.org/W2995682549","https://openalex.org/W3020331344"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
