{"id":"https://openalex.org/W3165560633","doi":"https://doi.org/10.1093/bioinformatics/btab407","title":"Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs","display_name":"Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs","publication_year":2021,"publication_date":"2021-05-27","ids":{"openalex":"https://openalex.org/W3165560633","doi":"https://doi.org/10.1093/bioinformatics/btab407","mag":"3165560633","pmid":"https://pubmed.ncbi.nlm.nih.gov/34048559"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078346111","display_name":"Michaela Areti Zervou","orcid":"https://orcid.org/0000-0002-1289-7463"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Michaela Areti Zervou","raw_affiliation_strings":["Department of Computer Science, University of Crete , Heraklion 700 13, Greece","Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Crete , Heraklion 700 13, Greece","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042266339","display_name":"Effrosyni Doutsi","orcid":"https://orcid.org/0000-0001-8601-1103"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Effrosyni Doutsi","raw_affiliation_strings":["Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece"],"affiliations":[{"raw_affiliation_string":"Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101949068","display_name":"Pavlos Pavlidis","orcid":"https://orcid.org/0000-0002-8359-7257"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Pavlos Pavlidis","raw_affiliation_strings":["Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece"],"affiliations":[{"raw_affiliation_string":"Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060388738","display_name":"Panagiotis Tsakalides","orcid":"https://orcid.org/0000-0003-4918-603X"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]},{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Panagiotis Tsakalides","raw_affiliation_strings":["Department of Computer Science, University of Crete , Heraklion 700 13, Greece","Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Crete , Heraklion 700 13, Greece","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Signal Processing Lab, Institute of Computer Science, Foundation for Research and Technology-Hellas , Heraklion 700 13, Greece","institution_ids":["https://openalex.org/I8901234"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042266339"],"corresponding_institution_ids":["https://openalex.org/I8901234"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4827,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.61198441,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"37","issue":"13","first_page":"1796","last_page":"1804"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7786343693733215},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7105063199996948},{"id":"https://openalex.org/keywords/visibility","display_name":"Visibility","score":0.5932012796401978},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5875657796859741},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5529666543006897},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5311870574951172},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4865216612815857},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.44711679220199585},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44409245252609253},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.4430350959300995},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4348001480102539},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4173053503036499},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3588731586933136},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3579253554344177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31884753704071045},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12052175402641296}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7786343693733215},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7105063199996948},{"id":"https://openalex.org/C123403432","wikidata":"https://www.wikidata.org/wiki/Q654068","display_name":"Visibility","level":2,"score":0.5932012796401978},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5875657796859741},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5529666543006897},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5311870574951172},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4865216612815857},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.44711679220199585},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44409245252609253},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.4430350959300995},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4348001480102539},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4173053503036499},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3588731586933136},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3579253554344177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31884753704071045},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12052175402641296},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34048559","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34048559","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322565","display_name":"Stavros Niarchos Foundation","ror":"https://ror.org/0210rze73"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1821507858","https://openalex.org/W1981005463","https://openalex.org/W1989447327","https://openalex.org/W2020580483","https://openalex.org/W2030793934","https://openalex.org/W2031365860","https://openalex.org/W2040704490","https://openalex.org/W2055538060","https://openalex.org/W2068361619","https://openalex.org/W2072168663","https://openalex.org/W2081681829","https://openalex.org/W2083361829","https://openalex.org/W2087317522","https://openalex.org/W2098475202","https://openalex.org/W2099593264","https://openalex.org/W2108067237","https://openalex.org/W2113784134","https://openalex.org/W2129103781","https://openalex.org/W2138072853","https://openalex.org/W2145957695","https://openalex.org/W2153187042","https://openalex.org/W2166663852","https://openalex.org/W2201492934","https://openalex.org/W2278480503","https://openalex.org/W2425910888","https://openalex.org/W2551658346","https://openalex.org/W2555609160","https://openalex.org/W2734475733","https://openalex.org/W2793852137","https://openalex.org/W2811297572","https://openalex.org/W2889032177","https://openalex.org/W2896636431","https://openalex.org/W2920054351","https://openalex.org/W2946987219","https://openalex.org/W2950270741","https://openalex.org/W2986112724","https://openalex.org/W3124661333"],"related_works":["https://openalex.org/W2392812199","https://openalex.org/W4200176076","https://openalex.org/W598185802","https://openalex.org/W2355516524","https://openalex.org/W2361471170","https://openalex.org/W2025616642","https://openalex.org/W2378211422","https://openalex.org/W1954972543","https://openalex.org/W2954738200","https://openalex.org/W2348534359"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
