{"id":"https://openalex.org/W3164076681","doi":"https://doi.org/10.1093/bioinformatics/btab405","title":"Tfcancer: a manually curated database of transcription factors associated with human cancers","display_name":"Tfcancer: a manually curated database of transcription factors associated with human cancers","publication_year":2021,"publication_date":"2021-05-25","ids":{"openalex":"https://openalex.org/W3164076681","doi":"https://doi.org/10.1093/bioinformatics/btab405","mag":"3164076681","pmid":"https://pubmed.ncbi.nlm.nih.gov/34113986"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab405","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab405","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030411354","display_name":"Qingqing Huang","orcid":"https://orcid.org/0000-0001-7080-7588"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingqing Huang","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042841301","display_name":"Zhengtang Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengtang Tan","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101989051","display_name":"Yanjing Li","orcid":"https://orcid.org/0000-0002-0747-6947"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjing Li","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101703866","display_name":"Wenzhu Wang","orcid":"https://orcid.org/0000-0003-2142-1536"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenzhu Wang","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065971535","display_name":"Mei Lang","orcid":null},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mei Lang","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067725727","display_name":"Changying Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changying Li","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050281823","display_name":"Zhiyun Guo","orcid":"https://orcid.org/0000-0003-2680-785X"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiyun Guo","raw_affiliation_strings":["School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China"],"raw_orcid":"https://orcid.org/0000-0003-2680-785X","affiliations":[{"raw_affiliation_string":"School of Life Sciences and Engineering, Southwest Jiaotong University , Chengdu 610031, China","institution_ids":["https://openalex.org/I4800084"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5050281823"],"corresponding_institution_ids":["https://openalex.org/I4800084"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3172,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5452488,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"37","issue":"22","first_page":"4288","last_page":"4290"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.5241000056266785,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.5241000056266785,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.16220000386238098,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09619999676942825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.8087751865386963},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6608408689498901},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5289402604103088},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4912974238395691},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44031602144241333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39540499448776245},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.373532772064209},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36726605892181396},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33132404088974},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3226666748523712},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13622742891311646}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8087751865386963},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6608408689498901},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5289402604103088},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4912974238395691},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44031602144241333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39540499448776245},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.373532772064209},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36726605892181396},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33132404088974},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3226666748523712},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13622742891311646}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab405","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab405","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34113986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34113986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4300000071525574,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2034907050","https://openalex.org/W2782348511","https://openalex.org/W2782454362","https://openalex.org/W2891678790","https://openalex.org/W2964315448","https://openalex.org/W2999392814","https://openalex.org/W2999456717","https://openalex.org/W3080500495"],"related_works":["https://openalex.org/W2944823289","https://openalex.org/W3037018281","https://openalex.org/W2972592048","https://openalex.org/W2358319515","https://openalex.org/W4321854979","https://openalex.org/W2003209439","https://openalex.org/W2497626292","https://openalex.org/W4312214821","https://openalex.org/W4361862506","https://openalex.org/W2390344072"],"abstract_inverted_index":{"SUMMARY:":[0],"Transcription":[1],"factors":[2],"(TFs)":[3],"are":[4,21,150,159],"critical":[5],"regulation":[6],"elements":[7],"and":[8,30,58,83,86,89,105,113,125,136],"its":[9],"dysregulation":[10],"can":[11],"lead":[12],"to":[13,132],"a":[14,44,100,123],"variety":[15],"of":[16,32,92,139],"cancers.":[17,37,95,144],"However,":[18],"currently,":[19],"there":[20],"no":[22],"such":[23],"online":[24],"resources":[25],"for":[26,103,128],"large-scale":[27],"collection,":[28],"storage":[29],"analysis":[31],"TF-cancer":[33],"associations":[34,54],"in":[35,94,142],"those":[36],"To":[38],"fill":[39],"this":[40],"gap,":[41],"we":[42],"present":[43],"database":[45],"called":[46],"TFcancer":[47,69,96,121,149],"(http://lcbb.swjtu.edu.cn/tfcancer/),":[48],"which":[49],"contains":[50],"3136":[51],"experimentally":[52],"supported":[53],"between":[55,81],"364":[56],"TFs":[57,82,93,140],"33":[59],"TCGA":[60],"cancers":[61],"by":[62],"manually":[63],"curating":[64],"more":[65],"than":[66],"1800":[67],"literature.":[68],"mainly":[70],"concentrates":[71],"on":[72],"four":[73],"aspects:":[74],"TF":[75],"expression,":[76],"molecular":[77,137],"alteration,":[78],"regulatory":[79],"relationships":[80],"target":[84],"genes,":[85],"biological":[87],"processes":[88],"signaling":[90],"pathways":[91],"not":[97],"only":[98],"provides":[99],"user-friendly":[101],"interface":[102],"browsing":[104],"searching":[106],"but":[107],"also":[108],"allows":[109],"flexible":[110],"data":[111,115,158],"downloading":[112],"user":[114],"submitting.":[116],"It":[117],"is":[118,122],"believed":[119],"that":[120],"helpful":[124],"valuable":[126],"resource":[127],"researchers":[129],"who":[130],"seek":[131],"understand":[133],"the":[134],"functions":[135],"mechanisms":[138],"involved":[141],"human":[143],"AVAILABILITY":[145],"AND":[146],"IMPLEMENTATION:":[147],"The":[148],"freely":[151],"available":[152,160],"at":[153,161],"http://lcbb.swjtu.edu.cn/tfcancer/.":[154],"SUPPLEMENTARY":[155],"INFORMATION:":[156],"Supplementary":[157],"Bioinformatics":[162],"online.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
