{"id":"https://openalex.org/W3164919367","doi":"https://doi.org/10.1093/bioinformatics/btab404","title":"Interfacing Seurat with the R tidy universe","display_name":"Interfacing Seurat with the R tidy universe","publication_year":2021,"publication_date":"2021-05-23","ids":{"openalex":"https://openalex.org/W3164919367","doi":"https://doi.org/10.1093/bioinformatics/btab404","mag":"3164919367","pmid":"https://pubmed.ncbi.nlm.nih.gov/34028547"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab404","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab404","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4100/41184074/btab404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4100/41184074/btab404.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069979105","display_name":"Stefano Mangiola","orcid":"https://orcid.org/0000-0001-7474-836X"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Stefano Mangiola","raw_affiliation_strings":["Bioinformatics Division, The Walter and Eliza Hall Institute , Parkville, VIC 3052, Australia","Department of Medical Biology, University of Melbourne , Melbourne, VIC 3010, Australia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, The Walter and Eliza Hall Institute , Parkville, VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, University of Melbourne , Melbourne, VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077384369","display_name":"Maria Doyle","orcid":"https://orcid.org/0000-0003-4847-8436"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Maria A Doyle","raw_affiliation_strings":["Peter MacCallum Cancer Centre , Melbourne, VIC 3000, Australia","Sir Peter MacCallum Department of Oncology, University of Melbourne , Melbourne, VIC 3010, Australia"],"affiliations":[{"raw_affiliation_string":"Peter MacCallum Cancer Centre , Melbourne, VIC 3000, Australia","institution_ids":["https://openalex.org/I2800555584"]},{"raw_affiliation_string":"Sir Peter MacCallum Department of Oncology, University of Melbourne , Melbourne, VIC 3010, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054939935","display_name":"Anthony T. Papenfuss","orcid":"https://orcid.org/0000-0002-1102-8506"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Anthony T Papenfuss","raw_affiliation_strings":["Bioinformatics Division, The Walter and Eliza Hall Institute , Parkville, VIC 3052, Australia","Department of Medical Biology, University of Melbourne , Melbourne, VIC 3010, Australia","Peter MacCallum Cancer Centre , Melbourne, VIC 3000, Australia","School of Mathematics and Statistics, University of Melbourne , Melbourne, VIC 3010, Australia","Sir Peter MacCallum Department of Oncology, University of Melbourne , Melbourne, VIC 3010, Australia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, The Walter and Eliza Hall Institute , Parkville, VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, University of Melbourne , Melbourne, VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Peter MacCallum Cancer Centre , Melbourne, VIC 3000, Australia","institution_ids":["https://openalex.org/I2800555584"]},{"raw_affiliation_string":"School of Mathematics and Statistics, University of Melbourne , Melbourne, VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Sir Peter MacCallum Department of Oncology, University of Melbourne , Melbourne, VIC 3010, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054939935","https://openalex.org/A5069979105"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I196021976","https://openalex.org/I2800555584"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.0765,"has_fulltext":true,"cited_by_count":138,"citation_normalized_percentile":{"value":0.98164633,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"37","issue":"22","first_page":"4100","last_page":"4107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interfacing","display_name":"Interfacing","score":0.866003155708313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8182847499847412},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6128413081169128},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5853414535522461},{"id":"https://openalex.org/keywords/adapter","display_name":"Adapter (computing)","score":0.5427253246307373},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5259889960289001},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4173213541507721},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3926774859428406},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38634759187698364},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3462804853916168},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3290964365005493},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32595181465148926},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22760441899299622},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22054925560951233},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.11391517519950867}],"concepts":[{"id":"https://openalex.org/C2776303644","wikidata":"https://www.wikidata.org/wiki/Q1020499","display_name":"Interfacing","level":2,"score":0.866003155708313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8182847499847412},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6128413081169128},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5853414535522461},{"id":"https://openalex.org/C177284502","wikidata":"https://www.wikidata.org/wiki/Q1005390","display_name":"Adapter (computing)","level":2,"score":0.5427253246307373},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5259889960289001},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4173213541507721},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3926774859428406},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38634759187698364},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3462804853916168},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3290964365005493},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32595181465148926},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22760441899299622},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22054925560951233},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.11391517519950867},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab404","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab404","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4100/41184074/btab404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34028547","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34028547","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/280694","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/280694","pdf_url":"http://hdl.handle.net/11343/280694","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9502154","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9502154","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab404","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab404","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4100/41184074/btab404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G110173800","display_name":null,"funder_award_id":"1116955","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164919367.pdf","grobid_xml":"https://content.openalex.org/works/W3164919367.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1973094248","https://openalex.org/W2012034410","https://openalex.org/W2071010503","https://openalex.org/W2516455020","https://openalex.org/W2540833380","https://openalex.org/W2783441930","https://openalex.org/W2786726944","https://openalex.org/W2794480084","https://openalex.org/W2885781875","https://openalex.org/W2900411771","https://openalex.org/W2907514116","https://openalex.org/W2923101443","https://openalex.org/W2927507212","https://openalex.org/W2941910667","https://openalex.org/W2945632419","https://openalex.org/W2949177718","https://openalex.org/W2951158909","https://openalex.org/W2966569571","https://openalex.org/W2969593942","https://openalex.org/W2971653850","https://openalex.org/W2989628906","https://openalex.org/W2989807288","https://openalex.org/W2990427812","https://openalex.org/W2995410603","https://openalex.org/W2997038947","https://openalex.org/W3007094285","https://openalex.org/W3009370296","https://openalex.org/W3012498554","https://openalex.org/W3015184839","https://openalex.org/W3026621107","https://openalex.org/W3026876979","https://openalex.org/W3031468808","https://openalex.org/W3037659634","https://openalex.org/W3043795706","https://openalex.org/W3047030674","https://openalex.org/W3124968121","https://openalex.org/W4251287806","https://openalex.org/W6728888212","https://openalex.org/W6760976125"],"related_works":["https://openalex.org/W1965180958","https://openalex.org/W2350029007","https://openalex.org/W2136647108","https://openalex.org/W2364538626","https://openalex.org/W2348830860","https://openalex.org/W2081270373","https://openalex.org/W1979131826","https://openalex.org/W2073324033","https://openalex.org/W2064411026","https://openalex.org/W2347413411"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":20},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}