{"id":"https://openalex.org/W3165708700","doi":"https://doi.org/10.1093/bioinformatics/btab399","title":"Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG","display_name":"Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG","publication_year":2021,"publication_date":"2021-05-25","ids":{"openalex":"https://openalex.org/W3165708700","doi":"https://doi.org/10.1093/bioinformatics/btab399","mag":"3165708700","pmid":"https://pubmed.ncbi.nlm.nih.gov/34037680"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab399","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab399","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4056/45966310/btab399.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4056/45966310/btab399.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034891163","display_name":"Luk\u00e1\u0161 H\u00fcbner","orcid":"https://orcid.org/0000-0001-9213-7597"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lukas H\u00fcbner","raw_affiliation_strings":["Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Baden, Heidelberg, W\u00fcrttemberg, Germany","Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Baden, Heidelberg, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108777053","display_name":"Alexey M. Kozlov","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexey M Kozlov","raw_affiliation_strings":["Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Baden, Heidelberg, W\u00fcrttemberg, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Baden, Heidelberg, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088448220","display_name":"Demian Hespe","orcid":"https://orcid.org/0000-0001-6232-2951"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Demian Hespe","raw_affiliation_strings":["Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082922326","display_name":"Peter Sanders","orcid":"https://orcid.org/0000-0003-3330-9349"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter Sanders","raw_affiliation_strings":["Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025640090","display_name":"Alexandros Stamatakis","orcid":"https://orcid.org/0000-0003-0353-0691"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexandros Stamatakis","raw_affiliation_strings":["Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Baden, Heidelberg, W\u00fcrttemberg, Germany","Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Baden, Heidelberg, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Baden, Karlsruhe, W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I102335020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034891163"],"corresponding_institution_ids":["https://openalex.org/I102335020","https://openalex.org/I71030271"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3254,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.5585262,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"37","issue":"22","first_page":"4056","last_page":"4063"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8118468523025513},{"id":"https://openalex.org/keywords/fault-tolerance","display_name":"Fault tolerance","score":0.7587665915489197},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7105172872543335},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6653381586074829},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5436127185821533},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.43618106842041016},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4059748649597168},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21006536483764648},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1556732952594757},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11524620652198792}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8118468523025513},{"id":"https://openalex.org/C63540848","wikidata":"https://www.wikidata.org/wiki/Q3140932","display_name":"Fault tolerance","level":2,"score":0.7587665915489197},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7105172872543335},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6653381586074829},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5436127185821533},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.43618106842041016},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4059748649597168},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21006536483764648},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1556732952594757},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11524620652198792},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab399","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab399","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4056/45966310/btab399.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34037680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34037680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9502163","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9502163","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab399","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab399","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4056/45966310/btab399.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324316","display_name":"Klaus Tschira Stiftung","ror":"https://ror.org/052jep661"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3165708700.pdf","grobid_xml":"https://content.openalex.org/works/W3165708700.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1584278023","https://openalex.org/W1986905947","https://openalex.org/W2016171324","https://openalex.org/W2059359550","https://openalex.org/W2072072075","https://openalex.org/W2079564876","https://openalex.org/W2116115793","https://openalex.org/W2119837484","https://openalex.org/W2124790653","https://openalex.org/W2128577831","https://openalex.org/W2140896159","https://openalex.org/W2141052558","https://openalex.org/W2150923351","https://openalex.org/W2166793002","https://openalex.org/W2170031755","https://openalex.org/W2263480027","https://openalex.org/W2296772319","https://openalex.org/W2339228518","https://openalex.org/W2340533753","https://openalex.org/W2466095195","https://openalex.org/W2561675875","https://openalex.org/W2609565072","https://openalex.org/W2949867654","https://openalex.org/W2963106581","https://openalex.org/W3101638477","https://openalex.org/W3107706092","https://openalex.org/W6634921276","https://openalex.org/W6692882405"],"related_works":["https://openalex.org/W4312203868","https://openalex.org/W2389214306","https://openalex.org/W2069013776","https://openalex.org/W2059637021","https://openalex.org/W2038264393","https://openalex.org/W4235240664","https://openalex.org/W1838576100","https://openalex.org/W2965083567","https://openalex.org/W2064720525","https://openalex.org/W2111125783"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
