{"id":"https://openalex.org/W3163036542","doi":"https://doi.org/10.1093/bioinformatics/btab374","title":"eCOMPASS: evaluative comparison of multiple protein alignments by statistical score","display_name":"eCOMPASS: evaluative comparison of multiple protein alignments by statistical score","publication_year":2021,"publication_date":"2021-05-12","ids":{"openalex":"https://openalex.org/W3163036542","doi":"https://doi.org/10.1093/bioinformatics/btab374","mag":"3163036542","pmid":"https://pubmed.ncbi.nlm.nih.gov/33983436"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab374","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab374","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3456/40853697/btab374.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3456/40853697/btab374.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010571747","display_name":"Andrew F. Neuwald","orcid":"https://orcid.org/0000-0002-0086-5755"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew F Neuwald","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine , Baltimore, MD 21201, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine , Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071679223","display_name":"Bryan Kolaczkowski","orcid":"https://orcid.org/0000-0002-9490-6019"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan D Kolaczkowski","raw_affiliation_strings":["Department of Microbiology and Cell Science, University of Florida , Gainesville, FL 32611, USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Cell Science, University of Florida , Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015061000","display_name":"Stephen F. Altschul","orcid":"https://orcid.org/0000-0003-2120-9631"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen F Altschul","raw_affiliation_strings":["Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010571747"],"corresponding_institution_ids":["https://openalex.org/I126744593"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0813,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.42981962,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"37","issue":"20","first_page":"3456","last_page":"3463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8781545162200928},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7320891618728638},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6952966451644897},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6314300298690796},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5666879415512085},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5419318675994873},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5339566469192505},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5320519208908081},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.514423668384552},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.47329917550086975},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36282217502593994},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32486844062805176},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24607163667678833},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1565263569355011},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1524859368801117},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09984785318374634}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8781545162200928},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7320891618728638},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6952966451644897},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6314300298690796},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5666879415512085},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5419318675994873},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5339566469192505},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5320519208908081},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.514423668384552},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.47329917550086975},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36282217502593994},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32486844062805176},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24607163667678833},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1565263569355011},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1524859368801117},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09984785318374634},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab374","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab374","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3456/40853697/btab374.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33983436","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33983436","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:7434656","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8545322","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8545322","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8545322","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab374","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab374","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3456/40853697/btab374.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2804373536","display_name":null,"funder_award_id":"GM125878","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3487339774","display_name":null,"funder_award_id":"BIO MCB 1817942","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7676450331","display_name":null,"funder_award_id":"GM125878","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7847268881","display_name":null,"funder_award_id":"R01 GM125878","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7863809926","display_name":null,"funder_award_id":"1817942","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8263700367","display_name":null,"funder_award_id":"125878","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8823736224","display_name":null,"funder_award_id":"R01 GM125878","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3163036542.pdf","grobid_xml":"https://content.openalex.org/works/W3163036542.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W136234207","https://openalex.org/W1519266993","https://openalex.org/W1979762151","https://openalex.org/W1982583124","https://openalex.org/W2006438342","https://openalex.org/W2008545402","https://openalex.org/W2030517878","https://openalex.org/W2030750720","https://openalex.org/W2050738924","https://openalex.org/W2051545676","https://openalex.org/W2060791849","https://openalex.org/W2061042699","https://openalex.org/W2069458148","https://openalex.org/W2081771568","https://openalex.org/W2082628285","https://openalex.org/W2092672051","https://openalex.org/W2097059553","https://openalex.org/W2104514367","https://openalex.org/W2105428289","https://openalex.org/W2110241016","https://openalex.org/W2111551123","https://openalex.org/W2114340287","https://openalex.org/W2120527610","https://openalex.org/W2121444044","https://openalex.org/W2124871329","https://openalex.org/W2133312664","https://openalex.org/W2137955461","https://openalex.org/W2139754669","https://openalex.org/W2140771555","https://openalex.org/W2146891463","https://openalex.org/W2158714788","https://openalex.org/W2166701319","https://openalex.org/W2167133711","https://openalex.org/W2169459078","https://openalex.org/W2170249492","https://openalex.org/W2170747616","https://openalex.org/W2402064298","https://openalex.org/W2431006159","https://openalex.org/W2744470994","https://openalex.org/W2783201045","https://openalex.org/W2803360717","https://openalex.org/W2804822363","https://openalex.org/W2898402099","https://openalex.org/W2951239856","https://openalex.org/W2951716718","https://openalex.org/W2982461819","https://openalex.org/W2996737396","https://openalex.org/W3003569240","https://openalex.org/W3004107745","https://openalex.org/W3025885307","https://openalex.org/W3034038259","https://openalex.org/W3034679743","https://openalex.org/W3107611715","https://openalex.org/W3107991991","https://openalex.org/W6779086539","https://openalex.org/W6787039124"],"related_works":["https://openalex.org/W2598672065","https://openalex.org/W1993817217","https://openalex.org/W3120610872","https://openalex.org/W1638297612","https://openalex.org/W2051969447","https://openalex.org/W2523911541","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
