{"id":"https://openalex.org/W3161640015","doi":"https://doi.org/10.1093/bioinformatics/btab366","title":"DetectIS: a pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data","display_name":"DetectIS: a pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data","publication_year":2021,"publication_date":"2021-05-11","ids":{"openalex":"https://openalex.org/W3161640015","doi":"https://doi.org/10.1093/bioinformatics/btab366","mag":"3161640015","pmid":"https://pubmed.ncbi.nlm.nih.gov/33978747"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab366","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab366","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4230/41183791/btab366.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4230/41183791/btab366.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074393963","display_name":"Luigi Grassi","orcid":"https://orcid.org/0000-0002-6308-7540"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Luigi Grassi","raw_affiliation_strings":["Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK"],"affiliations":[{"raw_affiliation_string":"Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030282073","display_name":"Claire Harris","orcid":"https://orcid.org/0000-0002-8695-7537"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Claire Harris","raw_affiliation_strings":["Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK"],"affiliations":[{"raw_affiliation_string":"Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101718121","display_name":"Jie Zhu","orcid":"https://orcid.org/0000-0003-0651-4064"},"institutions":[{"id":"https://openalex.org/I4210150756","display_name":"AstraZeneca (United States)","ror":"https://ror.org/043cec594","country_code":"US","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210150756"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Zhu","raw_affiliation_strings":["Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Gaithersburg, MD 20878, USA"],"affiliations":[{"raw_affiliation_string":"Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Gaithersburg, MD 20878, USA","institution_ids":["https://openalex.org/I4210150756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026293010","display_name":"Colin Hardman","orcid":"https://orcid.org/0000-0003-4992-1268"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Colin Hardman","raw_affiliation_strings":["Data Science & Artificial Intelligence, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK"],"affiliations":[{"raw_affiliation_string":"Data Science & Artificial Intelligence, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063523432","display_name":"Diane Hatton","orcid":"https://orcid.org/0000-0002-6600-021X"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Diane Hatton","raw_affiliation_strings":["Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK"],"affiliations":[{"raw_affiliation_string":"Biopharmaceutical Development, BioPharmaceuticals R&D, AstraZeneca , Cambridge, CB21 6GH, UK","institution_ids":["https://openalex.org/I105036370"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5074393963"],"corresponding_institution_ids":["https://openalex.org/I105036370"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.13,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.48066919,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"37","issue":"22","first_page":"4230","last_page":"4232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10613","display_name":"Virus-based gene therapy research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5970644950866699},{"id":"https://openalex.org/keywords/plasmid","display_name":"Plasmid","score":0.5955288410186768},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5569441914558411},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.533292293548584},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49419334530830383},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49274590611457825},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4714820384979248},{"id":"https://openalex.org/keywords/recombinant-dna","display_name":"Recombinant DNA","score":0.4670518934726715},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3657015562057495},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33780616521835327},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.280295193195343},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2459941804409027},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1343960165977478}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5970644950866699},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.5955288410186768},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5569441914558411},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.533292293548584},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49419334530830383},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49274590611457825},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4714820384979248},{"id":"https://openalex.org/C40767141","wikidata":"https://www.wikidata.org/wiki/Q285697","display_name":"Recombinant DNA","level":3,"score":0.4670518934726715},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3657015562057495},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33780616521835327},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.280295193195343},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2459941804409027},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1343960165977478},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab366","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab366","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4230/41183791/btab366.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33978747","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33978747","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9502153","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9502153","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab366","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab366","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4230/41183791/btab366.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3161640015.pdf","grobid_xml":"https://content.openalex.org/works/W3161640015.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1442136428","https://openalex.org/W1964568911","https://openalex.org/W1971313731","https://openalex.org/W1983105816","https://openalex.org/W1984865246","https://openalex.org/W1997984454","https://openalex.org/W2054524196","https://openalex.org/W2084513658","https://openalex.org/W2090693843","https://openalex.org/W2094599288","https://openalex.org/W2099259774","https://openalex.org/W2518983308","https://openalex.org/W2560804344","https://openalex.org/W2598769113","https://openalex.org/W2605897695","https://openalex.org/W2613409207","https://openalex.org/W2621899358","https://openalex.org/W2789843538","https://openalex.org/W2887748806","https://openalex.org/W2897602637","https://openalex.org/W2899043226","https://openalex.org/W2917928050","https://openalex.org/W2978145042","https://openalex.org/W3118380717","https://openalex.org/W6738829851"],"related_works":["https://openalex.org/W4391250611","https://openalex.org/W4388965752","https://openalex.org/W2274607931","https://openalex.org/W2429129060","https://openalex.org/W2750385014","https://openalex.org/W2908588478","https://openalex.org/W2114870167","https://openalex.org/W2409844362","https://openalex.org/W2890718724","https://openalex.org/W1984664666"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
