{"id":"https://openalex.org/W3161618053","doi":"https://doi.org/10.1093/bioinformatics/btab364","title":"VeTra: a tool for trajectory inference based on RNA velocity","display_name":"VeTra: a tool for trajectory inference based on RNA velocity","publication_year":2021,"publication_date":"2021-05-10","ids":{"openalex":"https://openalex.org/W3161618053","doi":"https://doi.org/10.1093/bioinformatics/btab364","mag":"3161618053","pmid":"https://pubmed.ncbi.nlm.nih.gov/33974009"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab364","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3509/40853961/btab364.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3509/40853961/btab364.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068094547","display_name":"Guangzheng Weng","orcid":"https://orcid.org/0000-0002-1422-2830"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Guangzheng Weng","raw_affiliation_strings":["Biotech Research and Innovation Centre (BRIC), University of Copenhagen , 2200 Copenhagen N, Denmark","Department of Biology, The Bioinformatics Centre, University of Copenhagen , 2200 Copenhagen N, Denmark","Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen , 2200 Copenhagen N, Denmark"],"affiliations":[{"raw_affiliation_string":"Biotech Research and Innovation Centre (BRIC), University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Biology, The Bioinformatics Centre, University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026578909","display_name":"Junil Kim","orcid":"https://orcid.org/0000-0002-1202-1808"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I141371507","display_name":"Soongsil University","ror":"https://ror.org/017xnm587","country_code":"KR","type":"education","lineage":["https://openalex.org/I141371507"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK","KR"],"is_corresponding":true,"raw_author_name":"Junil Kim","raw_affiliation_strings":["Biotech Research and Innovation Centre (BRIC), University of Copenhagen , 2200 Copenhagen N, Denmark","Department of Bioinformatics, School of Systems Biomedical Science, Soongsil University , 06978 Seoul, South Korea","Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen , 2200 Copenhagen N, Denmark"],"affiliations":[{"raw_affiliation_string":"Biotech Research and Innovation Centre (BRIC), University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Bioinformatics, School of Systems Biomedical Science, Soongsil University , 06978 Seoul, South Korea","institution_ids":["https://openalex.org/I141371507"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060918471","display_name":"Kyoung\u2010Jae Won","orcid":"https://orcid.org/0000-0002-2924-9630"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Kyoung Jae Won","raw_affiliation_strings":["Biotech Research and Innovation Centre (BRIC), University of Copenhagen , 2200 Copenhagen N, Denmark","Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen , 2200 Copenhagen N, Denmark"],"affiliations":[{"raw_affiliation_string":"Biotech Research and Innovation Centre (BRIC), University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen , 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026578909","https://openalex.org/A5060918471"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I141371507","https://openalex.org/I2801134892"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5454,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.82996879,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"20","first_page":"3509","last_page":"3513"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.775917649269104},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6479409337043762},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.528019368648529},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.44234734773635864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34002000093460083},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.332302987575531},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20074796676635742},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14554831385612488},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1159205436706543},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09080222249031067}],"concepts":[{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.775917649269104},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6479409337043762},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.528019368648529},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.44234734773635864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34002000093460083},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.332302987575531},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20074796676635742},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14554831385612488},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1159205436706543},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09080222249031067},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab364","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3509/40853961/btab364.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33974009","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33974009","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:7434665","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8545348","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8545348","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8545348","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/b4905e7c-5afb-44df-ac61-be08e2bdbf3f","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/b4905e7c-5afb-44df-ac61-be08e2bdbf3f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Weng , G , Kim , J & Won , K J 2021 , ' VeTra : a tool for trajectory inference based on RNA velocity ' , Bioinformatics , vol. 37 , no. 20 , btab364 , pp. 3509-3513 . https://doi.org/10.1093/bioinformatics/btab364","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab364","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3509/40853961/btab364.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3589578894","display_name":null,"funder_award_id":"NNF17CC0027852","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G4203317318","display_name":null,"funder_award_id":"0135-00243B","funder_id":"https://openalex.org/F4320322928","funder_display_name":"Danmarks Frie Forskningsfond"},{"id":"https://openalex.org/G5124950243","display_name":null,"funder_award_id":"NNF17CC002785","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G5616060558","display_name":null,"funder_award_id":"R313-2019-421","funder_id":"https://openalex.org/F4320321999","funder_display_name":"Lundbeckfonden"},{"id":"https://openalex.org/G7044228676","display_name":null,"funder_award_id":"NNF17CC0027852","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"}],"funders":[{"id":"https://openalex.org/F4320321999","display_name":"Lundbeckfonden","ror":"https://ror.org/03hz8wd80"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320322928","display_name":"Danmarks Frie Forskningsfond","ror":"https://ror.org/02sptwz63"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320327918","display_name":"H. Lundbeck A/S","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3161618053.pdf","grobid_xml":"https://content.openalex.org/works/W3161618053.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1984883254","https://openalex.org/W2030223334","https://openalex.org/W2048621454","https://openalex.org/W2102343998","https://openalex.org/W2110447217","https://openalex.org/W2137987484","https://openalex.org/W2147967285","https://openalex.org/W2148078342","https://openalex.org/W2172271464","https://openalex.org/W2344887288","https://openalex.org/W2509957998","https://openalex.org/W2726594986","https://openalex.org/W2766437506","https://openalex.org/W2767394894","https://openalex.org/W2783380616","https://openalex.org/W2927507212","https://openalex.org/W2948300330","https://openalex.org/W2950372712","https://openalex.org/W2951799803","https://openalex.org/W2952535935","https://openalex.org/W2972445800","https://openalex.org/W3004732550","https://openalex.org/W3010569643","https://openalex.org/W3047141442","https://openalex.org/W3084428275","https://openalex.org/W3102858608","https://openalex.org/W3119249186","https://openalex.org/W3121112961","https://openalex.org/W3174608384","https://openalex.org/W3209211486","https://openalex.org/W4251002338","https://openalex.org/W6773895785","https://openalex.org/W6788053818","https://openalex.org/W6795005581"],"related_works":["https://openalex.org/W4323768008","https://openalex.org/W1941703695","https://openalex.org/W3131574667","https://openalex.org/W4360995134","https://openalex.org/W4248382324","https://openalex.org/W3023605104","https://openalex.org/W2039473718","https://openalex.org/W2387529410","https://openalex.org/W2383578611","https://openalex.org/W2987583674"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}