{"id":"https://openalex.org/W3163106361","doi":"https://doi.org/10.1093/bioinformatics/btab356","title":"CNVfilteR: an R/Bioconductor package to identify false positives produced by germline NGS CNV detection tools","display_name":"CNVfilteR: an R/Bioconductor package to identify false positives produced by germline NGS CNV detection tools","publication_year":2021,"publication_date":"2021-05-12","ids":{"openalex":"https://openalex.org/W3163106361","doi":"https://doi.org/10.1093/bioinformatics/btab356","mag":"3163106361","pmid":"https://pubmed.ncbi.nlm.nih.gov/33983414"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab356","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab356","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4227/41183906/btab356.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4227/41183906/btab356.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080345196","display_name":"Jos\u00e9 Marcos Moreno-Cabrera","orcid":"https://orcid.org/0000-0001-8570-0345"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4210163547","display_name":"Institute of Predictive and Personalized Medicine of Cancer","ror":"https://ror.org/05hxqvt36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210163547"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Marcos Moreno-Cabrera","raw_affiliation_strings":["Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","institution_ids":["https://openalex.org/I4210163547"]},{"raw_affiliation_string":"Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064135168","display_name":"Jes\u00fas Del Valle","orcid":"https://orcid.org/0000-0003-3607-7045"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas del Valle","raw_affiliation_strings":["Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069148314","display_name":"Elisabeth Castellanos","orcid":"https://orcid.org/0000-0002-8133-5325"},"institutions":[{"id":"https://openalex.org/I4210163547","display_name":"Institute of Predictive and Personalized Medicine of Cancer","ror":"https://ror.org/05hxqvt36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210163547"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Elisabeth Castellanos","raw_affiliation_strings":["Clinical Genomics Unit, Clinical Genetics Service, Northern Metropolitan Clinical Laboratory, Germans Trias i Pujol University Hospital (HUGTiP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Genomics Unit, Clinical Genetics Service, Northern Metropolitan Clinical Laboratory, Germans Trias i Pujol University Hospital (HUGTiP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","institution_ids":["https://openalex.org/I4210163547"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080634247","display_name":"L\u00eddia Feliubadal\u00f3","orcid":"https://orcid.org/0000-0002-1736-0112"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Lidia Feliubadal\u00f3","raw_affiliation_strings":["Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081203668","display_name":"Marta Pineda","orcid":"https://orcid.org/0000-0002-5403-5845"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta Pineda","raw_affiliation_strings":["Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016791633","display_name":"Eduard Serra","orcid":"https://orcid.org/0000-0003-2895-9857"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4210163547","display_name":"Institute of Predictive and Personalized Medicine of Cancer","ror":"https://ror.org/05hxqvt36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210163547"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eduard Serra","raw_affiliation_strings":["Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0003-2895-9857","affiliations":[{"raw_affiliation_string":"Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","institution_ids":["https://openalex.org/I4210163547"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036172060","display_name":"Gabriel Capell\u00e1","orcid":"https://orcid.org/0000-0002-4669-7320"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gabriel Capell\u00e1","raw_affiliation_strings":["Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070254609","display_name":"Conxi L\u00e1zaro","orcid":"https://orcid.org/0000-0002-7198-5906"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Conxi L\u00e1zaro","raw_affiliation_strings":["Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Program, Joint Program on Hereditary Cancer, Catalan Institute of Oncology, Institut d'Investigaci\u00f3 Biom\u00e8dica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat , 08908 Barcelona, Spain","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, Centro de Investigaci\u00f3n Biom\u00e9dica en Red C\u00e1ncer (CIBERONC) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046399679","display_name":"Bernat Gel","orcid":"https://orcid.org/0000-0001-8878-349X"},"institutions":[{"id":"https://openalex.org/I4210163547","display_name":"Institute of Predictive and Personalized Medicine of Cancer","ror":"https://ror.org/05hxqvt36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210163547"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Bernat Gel","raw_affiliation_strings":["Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8878-349X","affiliations":[{"raw_affiliation_string":"Hereditary Cancer Group, Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), Campus Can Ruti , Badalona, 08916 Barcelona, Spain","institution_ids":["https://openalex.org/I4210163547"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5046399679","https://openalex.org/A5070254609"],"corresponding_institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210087039","https://openalex.org/I4210107147","https://openalex.org/I4210158561","https://openalex.org/I4210163547"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4534,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.67117531,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"37","issue":"22","first_page":"4227","last_page":"4229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.570900022983551,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.570900022983551,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.3179999887943268,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.03610000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9515311121940613},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.854849636554718},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.5879629850387573},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5538132786750793},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5002889633178711},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.4907713830471039},{"id":"https://openalex.org/keywords/copy-number-analysis","display_name":"Copy number analysis","score":0.433221697807312},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.41207054257392883},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3639121949672699},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35084307193756104},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3274107575416565},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3206866681575775},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12621551752090454},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12024649977684021},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10492974519729614}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9515311121940613},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.854849636554718},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.5879629850387573},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5538132786750793},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5002889633178711},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.4907713830471039},{"id":"https://openalex.org/C166608930","wikidata":"https://www.wikidata.org/wiki/Q5169175","display_name":"Copy number analysis","level":5,"score":0.433221697807312},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.41207054257392883},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3639121949672699},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35084307193756104},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3274107575416565},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3206866681575775},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12621551752090454},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12024649977684021},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10492974519729614}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab356","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab356","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4227/41183906/btab356.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33983414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33983414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9502136","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9502136","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:diposit.ub.edu:2445/182882","is_oa":true,"landing_page_url":"http://hdl.handle.net/2445/182882","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Ci\u00e8ncies Cl\u00edniques)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab356","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab356","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/22/4227/41183906/btab356.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1025283903","display_name":null,"funder_award_id":"2017SGR1282","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G1075404386","display_name":null,"funder_award_id":"PI16/","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G1652175984","display_name":"Abordaje de los retos actuales en el diagn\u00f3stico gen\u00e9tico del c\u00e1ncer hereditario mediante an\u00e1lisis integrativo de datos moleculares, cl\u00ednicos y poblacionales","funder_award_id":"PI19/00553","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G2028348840","display_name":null,"funder_award_id":"PI16/00563","funder_id":"https://openalex.org/F4320315803","funder_display_name":"Centres de Recerca de Catalunya"},{"id":"https://openalex.org/G3523929155","display_name":null,"funder_award_id":"PI19/00553","funder_id":"https://openalex.org/F4320315803","funder_display_name":"Centres de Recerca de Catalunya"},{"id":"https://openalex.org/G407814475","display_name":null,"funder_award_id":"2017 SGR 496","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G5438109271","display_name":null,"funder_award_id":"2017SGR496","funder_id":"https://openalex.org/F4320328325","funder_display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer"},{"id":"https://openalex.org/G7213154057","display_name":"Descifrando la complejidad gen\u00e9tica del c\u00e1ncer hereditario mediante un an\u00e1lisis multidimensional de un panel de genes de dise\u00f1o propio","funder_award_id":"PI16/00563","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G7897750139","display_name":null,"funder_award_id":"2017SGR1282","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G822659861","display_name":null,"funder_award_id":"2017SGR1282","funder_id":"https://openalex.org/F4320328325","funder_display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer"}],"funders":[{"id":"https://openalex.org/F4320315803","display_name":"Centres de Recerca de Catalunya","ror":null},{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320328325","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":null},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3163106361.pdf","grobid_xml":"https://content.openalex.org/works/W3163106361.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1988033469","https://openalex.org/W2012151892","https://openalex.org/W2111350087","https://openalex.org/W2140888103","https://openalex.org/W2155943701","https://openalex.org/W2166657289","https://openalex.org/W2411766195","https://openalex.org/W2527708324","https://openalex.org/W2551190949","https://openalex.org/W2570522939","https://openalex.org/W2593229630","https://openalex.org/W2782424591","https://openalex.org/W2788677853","https://openalex.org/W2867868648","https://openalex.org/W2904937322","https://openalex.org/W2915553291","https://openalex.org/W2947684550","https://openalex.org/W2952067146","https://openalex.org/W2952527196","https://openalex.org/W2989906520","https://openalex.org/W3036487724","https://openalex.org/W6763815618"],"related_works":["https://openalex.org/W2767491792","https://openalex.org/W2058336589","https://openalex.org/W4240520821","https://openalex.org/W2789608590","https://openalex.org/W2332308455","https://openalex.org/W2090795400","https://openalex.org/W4206119153","https://openalex.org/W2007779695","https://openalex.org/W2340439462","https://openalex.org/W3163106361"],"abstract_inverted_index":{"SUMMARY:":[0],"Germline":[1],"copy-number":[2],"variants":[3],"(CNVs)":[4],"are":[5,130,140],"relevant":[6],"mutations":[7],"for":[8],"multiple":[9],"genetics":[10],"fields,":[11],"such":[12],"as":[13],"the":[14,42,109],"study":[15],"of":[16,90,112],"hereditary":[17],"diseases.":[18],"However,":[19],"available":[20,132,141],"benchmarks":[21],"show":[22],"that":[23,40],"all":[24],"next-generation":[25],"sequencing":[26,82],"(NGS)":[27],"CNV":[28,76,114],"calling":[29,77,115],"tools":[30,78],"produce":[31],"false":[32,55,62,65,95],"positives.":[33,56],"We":[34,67],"developed":[35],"CNVfilteR,":[36],"an":[37],"R":[38],"package":[39,58],"uses":[41],"single-nucleotide":[43],"variant":[44],"calls":[45,106],"usually":[46],"obtained":[47],"in":[48,94],"germline":[49],"NGS":[50],"pipelines":[51],"to":[52,92,103],"identify":[53],"those":[54],"The":[57],"can":[59,107],"detect":[60,104],"both":[61],"deletions":[63],"and":[64,83,97,128],"duplications.":[66],"evaluated":[68],"CNVfilteR":[69,102,120],"performance":[70,111],"on":[71,79],"callsets":[72],"generated":[73],"by":[74],"13":[75],"three":[80],"whole-genome":[81],"541":[84],"panel":[85],"samples,":[86],"showing":[87],"a":[88],"decrease":[89],"up":[91],"44.8%":[93],"positives":[96],"consistent":[98],"F1-score":[99],"increase.":[100],"Using":[101],"false-positive":[105],"improve":[108],"overall":[110],"existing":[113],"pipelines.":[116],"AVAILABILITY":[117],"AND":[118],"IMPLEMENTATION:":[119],"is":[121],"released":[122],"under":[123],"Artistic-2.0":[124],"License.":[125],"Source":[126],"code":[127],"documentation":[129],"freely":[131],"at":[133,142],"Bioconductor":[134],"(http://www.bioconductor.org/packages/CNVfilteR).":[135],"SUPPLEMENTARY":[136],"INFORMATION:":[137],"Supplementary":[138],"data":[139],"Bioinformatics":[143],"online.":[144]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
