{"id":"https://openalex.org/W3160752125","doi":"https://doi.org/10.1093/bioinformatics/btab354","title":"NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks","display_name":"NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks","publication_year":2021,"publication_date":"2021-05-06","ids":{"openalex":"https://openalex.org/W3160752125","doi":"https://doi.org/10.1093/bioinformatics/btab354","mag":"3160752125","pmid":"https://pubmed.ncbi.nlm.nih.gov/33973998"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab354","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab354","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054096088","display_name":"Neng Huang","orcid":"https://orcid.org/0000-0001-7187-0749"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Neng Huang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","School of Computer Science and Engineering, Central South University , Changsha 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025266142","display_name":"Fan Nie","orcid":"https://orcid.org/0000-0003-1013-5235"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Nie","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","School of Computer Science and Engineering, Central South University , Changsha 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090322041","display_name":"Peng Ni","orcid":"https://orcid.org/0000-0002-0801-7574"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Ni","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","School of Computer Science and Engineering, Central South University , Changsha 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100683466","display_name":"Feng Luo","orcid":"https://orcid.org/0000-0002-4813-2403"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feng Luo","raw_affiliation_strings":["School of Computing, Clemson University , Clemson, SC 29634, USA"],"raw_orcid":"https://orcid.org/0000-0002-4813-2403","affiliations":[{"raw_affiliation_string":"School of Computing, Clemson University , Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division , King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-7108-3574","affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division , King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","School of Computer Science and Engineering, Central South University , Changsha 410083, China"],"raw_orcid":"https://orcid.org/0000-0003-1516-0480","affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100438360","https://openalex.org/A5100618900"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3026,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.79718295,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"37","issue":"19","first_page":"3120","last_page":"3127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9681000113487244,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9681000113487244,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.005499999970197678,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polishing","display_name":"Polishing","score":0.7647552490234375},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7435884475708008},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6784858703613281},{"id":"https://openalex.org/keywords/column","display_name":"Column (typography)","score":0.6412159204483032},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5878631472587585},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.5121669769287109},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47914499044418335},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.47583580017089844},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.46927180886268616},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4132183790206909},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3797725439071655},{"id":"https://openalex.org/keywords/engineering-drawing","display_name":"Engineering drawing","score":0.344412237405777},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34102827310562134},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3242228627204895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3121729791164398},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15156781673431396},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.12746527791023254},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.12405934929847717},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.1003483235836029},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09267997741699219}],"concepts":[{"id":"https://openalex.org/C138113353","wikidata":"https://www.wikidata.org/wiki/Q611639","display_name":"Polishing","level":2,"score":0.7647552490234375},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7435884475708008},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6784858703613281},{"id":"https://openalex.org/C2780551164","wikidata":"https://www.wikidata.org/wiki/Q2306599","display_name":"Column (typography)","level":3,"score":0.6412159204483032},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5878631472587585},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.5121669769287109},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47914499044418335},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.47583580017089844},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.46927180886268616},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4132183790206909},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3797725439071655},{"id":"https://openalex.org/C199639397","wikidata":"https://www.wikidata.org/wiki/Q1788588","display_name":"Engineering drawing","level":1,"score":0.344412237405777},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34102827310562134},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3242228627204895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3121729791164398},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15156781673431396},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.12746527791023254},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.12405934929847717},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.1003483235836029},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09267997741699219},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab354","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab354","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33973998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33973998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.kaust.edu.sa:10754/669519","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/669519","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G1187543282","display_name":null,"funder_award_id":"61772557","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4066238608","display_name":null,"funder_award_id":"B18059","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G57819151","display_name":null,"funder_award_id":"ABI-1759856","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8196091623","display_name":null,"funder_award_id":"U1909208","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1579534339","https://openalex.org/W1982855075","https://openalex.org/W1983403167","https://openalex.org/W2108234281","https://openalex.org/W2142113273","https://openalex.org/W2538143681","https://openalex.org/W2575750030","https://openalex.org/W2607669908","https://openalex.org/W2755804176","https://openalex.org/W2784788330","https://openalex.org/W2788228074","https://openalex.org/W2789843538","https://openalex.org/W2914303958","https://openalex.org/W2950063384","https://openalex.org/W2950354111","https://openalex.org/W2951434717","https://openalex.org/W2953326935","https://openalex.org/W2991295831","https://openalex.org/W2992976869","https://openalex.org/W3022783334","https://openalex.org/W3037791019","https://openalex.org/W3118511950","https://openalex.org/W3120530641","https://openalex.org/W6788178747"],"related_works":["https://openalex.org/W2774675543","https://openalex.org/W2952788979","https://openalex.org/W3009176350","https://openalex.org/W3167837387","https://openalex.org/W2949198880","https://openalex.org/W2763726643","https://openalex.org/W1519765314","https://openalex.org/W3124129973","https://openalex.org/W3005683565","https://openalex.org/W4387503895"],"abstract_inverted_index":{"MOTIVATION:":[0],"Oxford":[1],"Nanopore":[2,24],"sequencing":[3],"producing":[4],"long":[5],"reads":[6],"at":[7,116,248],"low":[8],"cost":[9],"has":[10],"made":[11],"many":[12],"breakthroughs":[13],"in":[14,23,41,77],"genomics":[15],"studies.":[16],"However,":[17,53],"the":[18,28,39,47,50,54,57,75,104,113,120,123,134,142,150,165,198,230],"large":[19],"number":[20],"of":[21,30,49,56,103,119,200,232],"errors":[22,40,76,222],"genome":[25,31,42],"assembly":[26,43,187,219,233],"affect":[27],"accuracy":[29,231],"analysis.":[32,52],"Polishing":[33],"is":[34,130,153],"a":[35,68,107,126,169,173,177],"procedure":[36],"to":[37,73,132,163],"correct":[38,74],"and":[44,84,109,185,192,196,209,227],"can":[45,228],"improve":[46,229],"reliability":[48],"downstream":[51],"performances":[55],"existing":[58],"polishing":[59,70,202,225],"methods":[60,203,226],"are":[61,246],"still":[62],"not":[63],"satisfactory.":[64],"RESULTS:":[65],"We":[66,180],"developed":[67],"novel":[69],"method,":[71,90],"NeuralPolish,":[72,205],"assemblies":[78],"based":[79],"on":[80],"alignment":[81,94,143],"matrix":[82,96,105,144,152],"construction":[83],"orthogonal":[85],"Bi-GRU":[86],"networks.":[87],"In":[88,122],"this":[89],"we":[91],"designed":[92],"an":[93],"feature":[95,151],"for":[97,194],"representing":[98],"read-to-assembly":[99],"alignment.":[100],"Each":[101],"row":[102,145],"represents":[106,112],"read,":[108],"each":[110,117,138],"column":[111,160,162],"aligned":[114],"bases":[115],"position":[118],"contig.":[121],"network":[124,129,159],"architecture,":[125],"bi-directional":[127,157],"GRU":[128,158],"used":[131,181],"extract":[133],"sequence":[135,175],"information":[136],"inside":[137],"read":[139],"by":[140,146,155,161,235],"processing":[141],"row.":[147],"After":[148],"that,":[149],"processed":[154],"another":[156],"calculate":[164],"probability":[166],"distribution.":[167],"Finally,":[168],"CTC":[170],"decoder":[171],"generates":[172],"polished":[174],"with":[176,220],"greedy":[178],"algorithm.":[179],"five":[182],"real":[183],"datasets":[184],"three":[186],"tools":[188],"including":[189,204],"Wtdbg2,":[190],"Flye":[191],"Canu":[193],"testing,":[195],"compared":[197],"results":[199],"different":[201,236],"Racon,":[206],"MarginPolish,":[207],"HELEN":[208],"Medaka.":[210],"Comprehensive":[211],"experiments":[212],"demonstrate":[213],"that":[214],"NeuralPolish":[215],"achieves":[216],"more":[217],"accurate":[218],"fewer":[221],"than":[223],"other":[224],"obtained":[234],"assemblers.":[237],"AVAILABILITY":[238],"AND":[239],"IMPLEMENTATION:":[240],"https://github.com/huangnengCSU/NeuralPolish.git.":[241],"SUPPLEMENTARY":[242],"INFORMATION:":[243],"Supplementary":[244],"data":[245],"available":[247],"Bioinformatics":[249],"online.":[250]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
