{"id":"https://openalex.org/W3158647328","doi":"https://doi.org/10.1093/bioinformatics/btab347","title":"CONSTAX2: improved taxonomic classification of environmental DNA markers","display_name":"CONSTAX2: improved taxonomic classification of environmental DNA markers","publication_year":2021,"publication_date":"2021-05-05","ids":{"openalex":"https://openalex.org/W3158647328","doi":"https://doi.org/10.1093/bioinformatics/btab347","mag":"3158647328","pmid":"https://pubmed.ncbi.nlm.nih.gov/33961008"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab347","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3941/41091783/btab347.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3941/41091783/btab347.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084146152","display_name":"Julian Liber","orcid":"https://orcid.org/0000-0002-9941-8268"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Julian A Liber","raw_affiliation_strings":["Department of Plant Biology, Michigan State University , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015509833","display_name":"Gregory Bonito","orcid":"https://orcid.org/0000-0002-7262-8978"},"institutions":[{"id":"https://openalex.org/I2801044051","display_name":"Great Lakes Bioenergy Research Center","ror":"https://ror.org/01ca2by25","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801044051"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory Bonito","raw_affiliation_strings":["Department of Plant Soil and Microbial Sciences, Michigan State University , East Lansing, MI 48824, USA","Great Lakes Bioenergy Research Center, Michigan State University , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Soil and Microbial Sciences, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Great Lakes Bioenergy Research Center, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I2801044051","https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038663063","display_name":"Gian Maria Niccol\u00f2 Benucci","orcid":"https://orcid.org/0000-0003-1589-947X"},"institutions":[{"id":"https://openalex.org/I2801044051","display_name":"Great Lakes Bioenergy Research Center","ror":"https://ror.org/01ca2by25","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801044051"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gian Maria Niccol\u00f2 Benucci","raw_affiliation_strings":["Department of Plant Soil and Microbial Sciences, Michigan State University , East Lansing, MI 48824, USA","Great Lakes Bioenergy Research Center, Michigan State University , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Soil and Microbial Sciences, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Great Lakes Bioenergy Research Center, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I2801044051","https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084146152"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.9032,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.96521557,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"37","issue":"21","first_page":"3941","last_page":"3943"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/environmental-dna","display_name":"Environmental DNA","score":0.6731043457984924},{"id":"https://openalex.org/keywords/genetic-marker","display_name":"Genetic marker","score":0.4691884517669678},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4228423237800598},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3806150555610657},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3738200068473816},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27394619584083557},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1422765552997589},{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.12095853686332703},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06424787640571594}],"concepts":[{"id":"https://openalex.org/C2779969263","wikidata":"https://www.wikidata.org/wiki/Q25098939","display_name":"Environmental DNA","level":3,"score":0.6731043457984924},{"id":"https://openalex.org/C190789776","wikidata":"https://www.wikidata.org/wiki/Q767511","display_name":"Genetic marker","level":3,"score":0.4691884517669678},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4228423237800598},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3806150555610657},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3738200068473816},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27394619584083557},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1422765552997589},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.12095853686332703},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06424787640571594}],"mesh":[{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab347","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3941/41091783/btab347.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33961008","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33961008","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1829161","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1829161","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1979482","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1979482","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab347","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/21/3941/41091783/btab347.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4966085425","display_name":null,"funder_award_id":"DEB 1737898","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320333880","display_name":"Great Lakes Bioenergy Research Center","ror":"https://ror.org/01ca2by25"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3158647328.pdf","grobid_xml":"https://content.openalex.org/works/W3158647328.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1847253990","https://openalex.org/W1992257986","https://openalex.org/W2015292449","https://openalex.org/W2055631148","https://openalex.org/W2088833470","https://openalex.org/W2108718991","https://openalex.org/W2152885278","https://openalex.org/W2158714788","https://openalex.org/W2518795824","https://openalex.org/W2678211758","https://openalex.org/W2765745983","https://openalex.org/W2773449982","https://openalex.org/W2807194798","https://openalex.org/W2900030356","https://openalex.org/W2990618091","https://openalex.org/W6726293321"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
