{"id":"https://openalex.org/W3159882286","doi":"https://doi.org/10.1093/bioinformatics/btab341","title":"SKSV: ultrafast structural variation detection from circular consensus sequencing reads","display_name":"SKSV: ultrafast structural variation detection from circular consensus sequencing reads","publication_year":2021,"publication_date":"2021-05-04","ids":{"openalex":"https://openalex.org/W3159882286","doi":"https://doi.org/10.1093/bioinformatics/btab341","mag":"3159882286","pmid":"https://pubmed.ncbi.nlm.nih.gov/33963826"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab341","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab341","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100613437","display_name":"Yadong Liu","orcid":"https://orcid.org/0000-0001-8385-1908"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Liu","raw_affiliation_strings":["Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037643151","display_name":"Tao Jiang","orcid":"https://orcid.org/0000-0002-0673-8503"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Jiang","raw_affiliation_strings":["Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043198787","display_name":"Junhao Su","orcid":"https://orcid.org/0000-0002-8560-3999"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Junhao Su","raw_affiliation_strings":["Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","Department of Computer Science, The University of Hong Kong , Hong Kong 999077, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong , Hong Kong 999077, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101691207","display_name":"Bo Liu","orcid":"https://orcid.org/0000-0003-1293-2780"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bo Liu","raw_affiliation_strings":["Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084159324","display_name":"Tianyi Zang","orcid":"https://orcid.org/0000-0003-0195-8731"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tianyi Zang","raw_affiliation_strings":["Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Faculty of Computing, Harbin Institute of Technology , Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5084159324","https://openalex.org/A5100392447","https://openalex.org/A5101691207"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5399,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.82922293,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"37","issue":"20","first_page":"3647","last_page":"3649"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.6045072078704834},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.5825532078742981},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45749008655548096},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44359031319618225},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32200294733047485},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3022579550743103},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.20534023642539978},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10279154777526855},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0750308632850647}],"concepts":[{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.6045072078704834},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.5825532078742981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45749008655548096},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44359031319618225},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32200294733047485},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3022579550743103},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20534023642539978},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10279154777526855},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0750308632850647},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab341","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab341","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33963826","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33963826","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2001906753","display_name":null,"funder_award_id":"2016YFC0901605","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2524202503","display_name":null,"funder_award_id":"2017YFC0907503","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4440211012","display_name":null,"funder_award_id":"2018YFC0910504","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G55772579","display_name":null,"funder_award_id":"32000467","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7674997079","display_name":null,"funder_award_id":"62076082","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2108234281","https://openalex.org/W2396849069","https://openalex.org/W2789843538","https://openalex.org/W2794879929","https://openalex.org/W2950121474","https://openalex.org/W2951764279","https://openalex.org/W2952224143","https://openalex.org/W2968499116","https://openalex.org/W2995995746","https://openalex.org/W3046401484","https://openalex.org/W6669149091"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
