{"id":"https://openalex.org/W3178792299","doi":"https://doi.org/10.1093/bioinformatics/btab330","title":"Topology-based sparsification of graph annotations","display_name":"Topology-based sparsification of graph annotations","publication_year":2021,"publication_date":"2021-05-03","ids":{"openalex":"https://openalex.org/W3178792299","doi":"https://doi.org/10.1093/bioinformatics/btab330","mag":"3178792299","pmid":"https://pubmed.ncbi.nlm.nih.gov/34252940"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab330","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i169/39620109/btab330.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i169/39620109/btab330.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071749437","display_name":"Daniel Danciu","orcid":"https://orcid.org/0000-0002-6175-3642"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daniel Danciu","raw_affiliation_strings":["Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085609478","display_name":"Mikhail Karasikov","orcid":"https://orcid.org/0000-0001-6200-5972"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mikhail Karasikov","raw_affiliation_strings":["Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","Swiss Institute of Bioinformatics , Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033347097","display_name":"Harun Mustafa","orcid":"https://orcid.org/0000-0002-2125-6086"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Harun Mustafa","raw_affiliation_strings":["Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","Swiss Institute of Bioinformatics , Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070168682","display_name":"Andr\u00e9 Kahles","orcid":"https://orcid.org/0000-0002-3411-0692"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Andr\u00e9 Kahles","raw_affiliation_strings":["Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","Swiss Institute of Bioinformatics , Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035416263","display_name":"Gunnar R\u00e4tsch","orcid":"https://orcid.org/0000-0001-5486-8532"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Gunnar R\u00e4tsch","raw_affiliation_strings":["Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","Department of Biology, ETH Zurich , Zurich, Switzerland","Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","Swiss Institute of Bioinformatics , Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Research, University Hospital Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Biology, ETH Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Computer Science, Biomedical Informatics Group, ETH Zurich , Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5035416263","https://openalex.org/A5070168682"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088","https://openalex.org/I4210100468"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":637,"currency":"EUR","value_usd":687},"fwci":0.4885,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.61875618,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"37","issue":"Supplement_1","first_page":"i169","last_page":"i176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6557000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6557000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.09920000284910202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.09049999713897705,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.7277529239654541},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6893789172172546},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6758074164390564},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48657429218292236},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.46886521577835083},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.4464680850505829},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34581130743026733},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2197376787662506},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2095971405506134},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18947231769561768}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.7277529239654541},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6893789172172546},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6758074164390564},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48657429218292236},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.46886521577835083},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.4464680850505829},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34581130743026733},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2197376787662506},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2095971405506134},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18947231769561768}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab330","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i169/39620109/btab330.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34252940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34252940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8346655","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8346655","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab330","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i169/39620109/btab330.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6696531210","display_name":null,"funder_award_id":"407540_167331","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3178792299.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1931027898","https://openalex.org/W1974033543","https://openalex.org/W2010361633","https://openalex.org/W2057223122","https://openalex.org/W2104846587","https://openalex.org/W2105656684","https://openalex.org/W2131106408","https://openalex.org/W2173732482","https://openalex.org/W2611104626","https://openalex.org/W2735611463","https://openalex.org/W2809649683","https://openalex.org/W2901125500","https://openalex.org/W2913847081","https://openalex.org/W2949503312","https://openalex.org/W2950150251","https://openalex.org/W2950964375","https://openalex.org/W2951157731","https://openalex.org/W2952379095","https://openalex.org/W2957382730","https://openalex.org/W2969627863","https://openalex.org/W2998284004","https://openalex.org/W3011785159","https://openalex.org/W3090493712","https://openalex.org/W3113074526","https://openalex.org/W6891286447"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W3125399386","https://openalex.org/W2354744388","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W2122316710","https://openalex.org/W4301429973","https://openalex.org/W2951695076","https://openalex.org/W1964377951"],"abstract_inverted_index":{"MOTIVATION:":[0],"Since":[1],"the":[2,59,98,109,116,123,136,155,195,204,209,218,242,260,267,271],"amount":[3],"of":[4,47,94,111,143,154,208,220,233],"published":[5],"biological":[6],"sequencing":[7,48],"data":[8,19,268],"is":[9,245,255],"growing":[10],"exponentially,":[11],"efficient":[12,62],"methods":[13,63],"for":[14,32,43,64,84,169],"storing":[15,65],"and":[16,113,118,133,159,266],"indexing":[17],"this":[18,29,76],"are":[20,39,70,273],"more":[21],"needed":[22],"than":[23,249],"ever":[24],"to":[25,56,108,122,139],"truly":[26],"benefit":[27],"from":[28],"invaluable":[30],"resource":[31],"biomedical":[33],"research.":[34],"Labeled":[35],"de":[36],"Bruijn":[37],"graphs":[38,69,140],"a":[40,81,187,239],"frequently-used":[41],"approach":[42],"representing":[44],"large":[45],"sets":[46],"data.":[49],"While":[50],"significant":[51],"progress":[52],"has":[53],"been":[54],"made":[55],"succinctly":[57],"represent":[58],"graph":[60,86,124],"itself,":[61],"labels":[66,87,114],"on":[67,174,203],"such":[68],"still":[71],"rapidly":[72],"evolving.":[73],"RESULTS:":[74],"In":[75,126],"article,":[77],"we":[78],"present":[79],"RowDiff,":[80],"new":[82],"technique":[83,137],"compacting":[85],"by":[88,229],"leveraging":[89],"expected":[90],"similarities":[91],"in":[92,97,104,115,119,186,190,257,270],"annotations":[93],"vertices":[95,112],"adjacent":[96],"graph.":[99],"RowDiff":[100,145,181,215,237,254],"can":[101,129,146,160],"be":[102,130,147,163],"constructed":[103],"linear":[105],"time":[106],"relative":[107],"number":[110],"graph,":[117],"space":[120],"proportional":[121],"size.":[125],"addition,":[127],"construction":[128],"efficiently":[131],"parallelized":[132],"distributed,":[134],"making":[135],"applicable":[138],"with":[141,165,183,238],"trillions":[142],"nodes.":[144],"viewed":[148],"as":[149,225],"an":[150,230],"intermediary":[151],"sparsification":[152,216],"step":[153],"original":[156],"annotation":[157,191,200,222,244],"matrix":[158],"thus":[161],"naturally":[162],"combined":[164,182],"existing":[166],"generic":[167],"schemes":[168],"compressed":[170,226],"binary":[171],"matrices.":[172],"Experiments":[173,202],"10":[175],"000":[176],"RNA-seq":[177],"datasets":[178],"show":[179,212],"that":[180,213],"multi-BRWT":[184,240],"results":[185],"30%":[188],"reduction":[189],"footprint":[192],"over":[193],"Mantis-MST,":[194],"previously":[196],"known":[197],"most":[198],"compact":[199],"representation.":[201],"sparser":[205],"Fungi":[206],"subset":[207],"RefSeq":[210],"collection":[211],"applying":[214],"reduces":[217],"size":[219],"individual":[221],"columns":[223],"stored":[224],"bit":[227],"vectors":[228],"average":[231],"factor":[232],"42.":[234],"When":[235],"combining":[236],"representation,":[241],"resulting":[243],"26":[246],"times":[247],"smaller":[248],"Mantis-MST.":[250],"AVAILABILITY":[251],"AND":[252],"IMPLEMENTATION:":[253],"implemented":[256],"C++":[258],"within":[259],"MetaGraph":[261],"framework.":[262],"The":[263],"source":[264],"code":[265],"used":[269],"experiments":[272],"publicly":[274],"available":[275],"at":[276],"https://github.com/ratschlab/row_diff.":[277]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
