{"id":"https://openalex.org/W3180762521","doi":"https://doi.org/10.1093/bioinformatics/btab300","title":"Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins","display_name":"Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins","publication_year":2021,"publication_date":"2021-04-28","ids":{"openalex":"https://openalex.org/W3180762521","doi":"https://doi.org/10.1093/bioinformatics/btab300","mag":"3180762521","pmid":"https://pubmed.ncbi.nlm.nih.gov/34252974"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab300","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i308/39620505/btab300.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i308/39620505/btab300.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083119471","display_name":"Salma Sohrabi-Jahromi","orcid":"https://orcid.org/0000-0002-8417-8230"},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Salma Sohrabi-Jahromi","raw_affiliation_strings":["Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen 37077, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen 37077, Germany","institution_ids":["https://openalex.org/I4210131661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010030898","display_name":"Johannes S\u00f6ding","orcid":"https://orcid.org/0000-0001-9642-8244"},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Johannes S\u00f6ding","raw_affiliation_strings":["Campus-Institut Data Science (CIDAS) , G\u00f6ttingen 37077, Germany","Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen 37077, Germany"],"affiliations":[{"raw_affiliation_string":"Campus-Institut Data Science (CIDAS) , G\u00f6ttingen 37077, Germany","institution_ids":[]},{"raw_affiliation_string":"Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen 37077, Germany","institution_ids":["https://openalex.org/I4210131661"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010030898"],"corresponding_institution_ids":["https://openalex.org/I4210131661"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5694,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.64518893,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"37","issue":"Supplement_1","first_page":"i308","last_page":"i316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7720432281494141},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.7437987923622131},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6515547037124634},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.593248724937439},{"id":"https://openalex.org/keywords/binding-selectivity","display_name":"Binding selectivity","score":0.5271111130714417},{"id":"https://openalex.org/keywords/plasma-protein-binding","display_name":"Plasma protein binding","score":0.4829237163066864},{"id":"https://openalex.org/keywords/riboswitch","display_name":"Riboswitch","score":0.47177624702453613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4310927391052246},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.4206851124763489},{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.417554646730423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30598950386047363},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.25666874647140503},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2445542812347412},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.23943963646888733},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.21647590398788452},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19116675853729248},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1676715910434723},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15379935503005981}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7720432281494141},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.7437987923622131},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6515547037124634},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.593248724937439},{"id":"https://openalex.org/C96739231","wikidata":"https://www.wikidata.org/wiki/Q4914025","display_name":"Binding selectivity","level":2,"score":0.5271111130714417},{"id":"https://openalex.org/C51639874","wikidata":"https://www.wikidata.org/wiki/Q167149","display_name":"Plasma protein binding","level":2,"score":0.4829237163066864},{"id":"https://openalex.org/C148625055","wikidata":"https://www.wikidata.org/wiki/Q418840","display_name":"Riboswitch","level":5,"score":0.47177624702453613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4310927391052246},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.4206851124763489},{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.417554646730423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30598950386047363},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.25666874647140503},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2445542812347412},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.23943963646888733},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.21647590398788452},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19116675853729248},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1676715910434723},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15379935503005981},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab300","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i308/39620505/btab300.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34252974","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34252974","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:publications.goettingen-research-online.de:2/103747","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/103747","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"unknown"},{"id":"pmh:oai:pubmedcentral.nih.gov:8275352","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8275352","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab300","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i308/39620505/btab300.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G4376339242","display_name":null,"funder_award_id":"SPP2191","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3180762521.pdf","grobid_xml":"https://content.openalex.org/works/W3180762521.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1929414144","https://openalex.org/W1975405706","https://openalex.org/W1979249520","https://openalex.org/W1997535872","https://openalex.org/W2015175027","https://openalex.org/W2018721001","https://openalex.org/W2022299887","https://openalex.org/W2053003053","https://openalex.org/W2062961793","https://openalex.org/W2074307047","https://openalex.org/W2079873244","https://openalex.org/W2081164083","https://openalex.org/W2082102894","https://openalex.org/W2094652474","https://openalex.org/W2103375140","https://openalex.org/W2105694586","https://openalex.org/W2114532236","https://openalex.org/W2121591761","https://openalex.org/W2132863465","https://openalex.org/W2139044529","https://openalex.org/W2150029909","https://openalex.org/W2154533941","https://openalex.org/W2170956993","https://openalex.org/W2285139619","https://openalex.org/W2307041907","https://openalex.org/W2413160504","https://openalex.org/W2619839156","https://openalex.org/W2691563344","https://openalex.org/W2751343946","https://openalex.org/W2762250455","https://openalex.org/W2785329615","https://openalex.org/W2793222545","https://openalex.org/W2799487719","https://openalex.org/W2949344281","https://openalex.org/W2953051245","https://openalex.org/W2971759641","https://openalex.org/W2977341578","https://openalex.org/W3003684254","https://openalex.org/W3004000934","https://openalex.org/W3014747614","https://openalex.org/W3036197410","https://openalex.org/W3043851516","https://openalex.org/W3047957270","https://openalex.org/W3072711007","https://openalex.org/W3081837399","https://openalex.org/W3083826172","https://openalex.org/W3122043336","https://openalex.org/W3127541804","https://openalex.org/W3163257742","https://openalex.org/W3163483489","https://openalex.org/W4247787147","https://openalex.org/W4380089158","https://openalex.org/W4388376074","https://openalex.org/W6674139297","https://openalex.org/W6789059661"],"related_works":["https://openalex.org/W2527742233","https://openalex.org/W3165554045","https://openalex.org/W2810077789","https://openalex.org/W1968451933","https://openalex.org/W3166747980","https://openalex.org/W3127344484","https://openalex.org/W2120446363","https://openalex.org/W3180762521","https://openalex.org/W2156558709","https://openalex.org/W4403018092"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
