{"id":"https://openalex.org/W3160420762","doi":"https://doi.org/10.1093/bioinformatics/btab294","title":"TITAN: T-cell receptor specificity prediction with bimodal attention networks","display_name":"TITAN: T-cell receptor specificity prediction with bimodal attention networks","publication_year":2021,"publication_date":"2021-04-26","ids":{"openalex":"https://openalex.org/W3160420762","doi":"https://doi.org/10.1093/bioinformatics/btab294","mag":"3160420762","pmid":"https://pubmed.ncbi.nlm.nih.gov/34252922"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab294","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab294","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i237/39620156/btab294.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i237/39620156/btab294.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056730563","display_name":"Anna Weber","orcid":"https://orcid.org/0000-0003-3200-8210"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Anna Weber","raw_affiliation_strings":["ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE) , 4058 Basel, Switzerland","IBM Research Europe , 8803 R\u00fcschlikon, Switzerland","ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE), 4058 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE) , 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"IBM Research Europe , 8803 R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]},{"raw_affiliation_string":"ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE), 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002562002","display_name":"Jannis Born","orcid":"https://orcid.org/0000-0001-8307-5670"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jannis Born","raw_affiliation_strings":["ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE) , 4058 Basel, Switzerland","IBM Research Europe , 8803 R\u00fcschlikon, Switzerland","ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE), 4058 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE) , 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"IBM Research Europe , 8803 R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]},{"raw_affiliation_string":"ETH Zurich, Department of Biosystems Science and Engineering (D-BSSE), 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016524881","display_name":"Mar\u00eda Rodr\u00edguez Mart\u00ednez","orcid":"https://orcid.org/0000-0003-3766-4233"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Rodriguez Mart\u00ednez","raw_affiliation_strings":["IBM Research Europe , 8803 R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Europe , 8803 R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5056730563"],"corresponding_institution_ids":["https://openalex.org/I35440088","https://openalex.org/I4210126328"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":10.4114,"has_fulltext":true,"cited_by_count":180,"citation_normalized_percentile":{"value":0.99073437,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"37","issue":"Supplement_1","first_page":"i237","last_page":"i244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9422668218612671},{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.6216059327125549},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5934557914733887},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5765231251716614},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47296375036239624},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.46219828724861145},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3966924846172333},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3608921766281128},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.327043354511261},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.3090178370475769},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19888263940811157},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.19293805956840515}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9422668218612671},{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.6216059327125549},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5934557914733887},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5765231251716614},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47296375036239624},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.46219828724861145},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3966924846172333},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3608921766281128},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.327043354511261},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.3090178370475769},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19888263940811157},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.19293805956840515}],"mesh":[{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037182","descriptor_name":"T-Cell Antigen Receptor Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037182","descriptor_name":"T-Cell Antigen Receptor Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037182","descriptor_name":"T-Cell Antigen Receptor Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab294","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab294","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i237/39620156/btab294.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34252922","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34252922","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2105.03323","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2105.03323","pdf_url":"https://arxiv.org/pdf/2105.03323","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8275323","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8275323","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab294","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab294","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i237/39620156/btab294.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G3470680887","display_name":null,"funder_award_id":"813545","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5451116430","display_name":null,"funder_award_id":"826121","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3160420762.pdf","grobid_xml":"https://content.openalex.org/works/W3160420762.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W1647671624","https://openalex.org/W2038702914","https://openalex.org/W2143210482","https://openalex.org/W2173617309","https://openalex.org/W2204695023","https://openalex.org/W2529996553","https://openalex.org/W2558999090","https://openalex.org/W2613978126","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2769423117","https://openalex.org/W2786672974","https://openalex.org/W2894849296","https://openalex.org/W2942173509","https://openalex.org/W2950230115","https://openalex.org/W2979330275","https://openalex.org/W2982242904","https://openalex.org/W2990308980","https://openalex.org/W3048782167","https://openalex.org/W3078644326","https://openalex.org/W3080758869","https://openalex.org/W3098269892","https://openalex.org/W3112376646","https://openalex.org/W3113525558","https://openalex.org/W3130227682","https://openalex.org/W3133523400","https://openalex.org/W3134285993","https://openalex.org/W3135351475","https://openalex.org/W3138156743","https://openalex.org/W3158236124","https://openalex.org/W3177500196","https://openalex.org/W3194320644","https://openalex.org/W4287724045","https://openalex.org/W6636510571","https://openalex.org/W6636915900","https://openalex.org/W6748816842","https://openalex.org/W6755184371","https://openalex.org/W6780145172","https://openalex.org/W6787543007","https://openalex.org/W6791129610"],"related_works":["https://openalex.org/W2059333433","https://openalex.org/W2040128205","https://openalex.org/W2060075608","https://openalex.org/W2026444950","https://openalex.org/W2092033815","https://openalex.org/W2168929838","https://openalex.org/W2037024992","https://openalex.org/W2140205174","https://openalex.org/W2064485034","https://openalex.org/W104003022"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":38},{"year":2024,"cited_by_count":49},{"year":2023,"cited_by_count":57},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
