{"id":"https://openalex.org/W3178911446","doi":"https://doi.org/10.1093/bioinformatics/btab286","title":"CALLR: a semi-supervised cell-type annotation method for single-cell RNA sequencing data","display_name":"CALLR: a semi-supervised cell-type annotation method for single-cell RNA sequencing data","publication_year":2021,"publication_date":"2021-04-24","ids":{"openalex":"https://openalex.org/W3178911446","doi":"https://doi.org/10.1093/bioinformatics/btab286","mag":"3178911446","pmid":"https://pubmed.ncbi.nlm.nih.gov/34252936"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i51/39620010/btab286.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i51/39620010/btab286.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069720141","display_name":"Ziyang Wei","orcid":"https://orcid.org/0000-0002-4286-8946"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Ziyang Wei","raw_affiliation_strings":["Department of Statistics, University of Chicago , Chicago, IL 60637, USA","School of Mathematical Sciences, Fudan University , Shanghai 200433, China"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Chicago , Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"School of Mathematical Sciences, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024866341","display_name":"Shuqin Zhang","orcid":"https://orcid.org/0000-0001-8223-844X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shuqin Zhang","raw_affiliation_strings":["Laboratory of Mathematics for Nonlinear Science, Fudan University , Shanghai 200433, China","School of Mathematical Sciences, Fudan University , Shanghai 200433, China","Shanghai Key Laboratory for Contemporary Applied Mathematics, Fudan University , Shanghai 200433, China"],"affiliations":[{"raw_affiliation_string":"Laboratory of Mathematics for Nonlinear Science, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Mathematical Sciences, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory for Contemporary Applied Mathematics, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5024866341"],"corresponding_institution_ids":["https://openalex.org/I24943067"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7081,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.84817595,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"37","issue":"Supplement_1","first_page":"i51","last_page":"i58"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9059323072433472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7382107973098755},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7243638634681702},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.49915432929992676},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.48889103531837463},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4762333035469055},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45985323190689087},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4322045147418976},{"id":"https://openalex.org/keywords/semi-supervised-learning","display_name":"Semi-supervised learning","score":0.41728514432907104},{"id":"https://openalex.org/keywords/laplacian-matrix","display_name":"Laplacian matrix","score":0.4153957664966583},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35760194063186646},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.08651867508888245},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.07061249017715454}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9059323072433472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7382107973098755},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7243638634681702},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.49915432929992676},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.48889103531837463},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4762333035469055},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45985323190689087},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4322045147418976},{"id":"https://openalex.org/C58973888","wikidata":"https://www.wikidata.org/wiki/Q1041418","display_name":"Semi-supervised learning","level":2,"score":0.41728514432907104},{"id":"https://openalex.org/C115178988","wikidata":"https://www.wikidata.org/wiki/Q772067","display_name":"Laplacian matrix","level":3,"score":0.4153957664966583},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35760194063186646},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.08651867508888245},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.07061249017715454}],"mesh":[{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i51/39620010/btab286.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34252936","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34252936","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8686678","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8686678","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i51/39620010/btab286.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6765864294","display_name":null,"funder_award_id":"20ZR1407700","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"}],"funders":[{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3178911446.pdf","grobid_xml":"https://content.openalex.org/works/W3178911446.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1552434751","https://openalex.org/W1580018887","https://openalex.org/W1984689597","https://openalex.org/W2001246746","https://openalex.org/W2097360283","https://openalex.org/W2114515438","https://openalex.org/W2131681506","https://openalex.org/W2149573463","https://openalex.org/W2152692691","https://openalex.org/W2169898291","https://openalex.org/W2205688503","https://openalex.org/W2288153033","https://openalex.org/W2332292689","https://openalex.org/W2373831850","https://openalex.org/W2472063172","https://openalex.org/W2523369352","https://openalex.org/W2523620612","https://openalex.org/W2588569583","https://openalex.org/W2598326928","https://openalex.org/W2601723752","https://openalex.org/W2763051133","https://openalex.org/W2763574125","https://openalex.org/W2782986228","https://openalex.org/W2789949350","https://openalex.org/W2794480084","https://openalex.org/W2796170779","https://openalex.org/W2802302382","https://openalex.org/W2808421356","https://openalex.org/W2894687190","https://openalex.org/W2895456557","https://openalex.org/W2897249806","https://openalex.org/W2902652978","https://openalex.org/W2907514116","https://openalex.org/W2937917790","https://openalex.org/W2939093246","https://openalex.org/W2942380588","https://openalex.org/W2949272108","https://openalex.org/W2949329924","https://openalex.org/W2950420695","https://openalex.org/W2951914955","https://openalex.org/W2952303649","https://openalex.org/W2952602120","https://openalex.org/W2953251392","https://openalex.org/W2959295202","https://openalex.org/W2971398276","https://openalex.org/W2973034691","https://openalex.org/W2984353870","https://openalex.org/W2997470228","https://openalex.org/W3004512212","https://openalex.org/W3032465961","https://openalex.org/W3092295864","https://openalex.org/W3092982430","https://openalex.org/W3093217784","https://openalex.org/W3099768174","https://openalex.org/W3106188259","https://openalex.org/W4294541781","https://openalex.org/W6677067114"],"related_works":["https://openalex.org/W122912556","https://openalex.org/W1586607209","https://openalex.org/W4312414840","https://openalex.org/W2621411691","https://openalex.org/W2271357838","https://openalex.org/W2556866732","https://openalex.org/W2348322200","https://openalex.org/W2981952041","https://openalex.org/W2328989934","https://openalex.org/W4288358127"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
