{"id":"https://openalex.org/W3180132377","doi":"https://doi.org/10.1093/bioinformatics/btab265","title":"CentromereArchitect: inference and analysis of the architecture of centromeres","display_name":"CentromereArchitect: inference and analysis of the architecture of centromeres","publication_year":2021,"publication_date":"2021-04-27","ids":{"openalex":"https://openalex.org/W3180132377","doi":"https://doi.org/10.1093/bioinformatics/btab265","mag":"3180132377","pmid":"https://pubmed.ncbi.nlm.nih.gov/34252949"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab265","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab265","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i196/39620181/btab265.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i196/39620181/btab265.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022112085","display_name":"Tatiana Dvorkina","orcid":"https://orcid.org/0000-0003-2253-1702"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Tatiana Dvorkina","raw_affiliation_strings":["Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011625737","display_name":"Olga Kunyavskaya","orcid":"https://orcid.org/0000-0001-9544-6344"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Olga Kunyavskaya","raw_affiliation_strings":["Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078002589","display_name":"Andrey V. Bzikadze","orcid":"https://orcid.org/0000-0002-7928-7950"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrey V Bzikadze","raw_affiliation_strings":["Graduate Program in Bioinformatics and Systems Biology, University of California , San Diego, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Graduate Program in Bioinformatics and Systems Biology, University of California , San Diego, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014206172","display_name":"Ivan A. Alexandrov","orcid":"https://orcid.org/0000-0003-4342-2003"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ivan Alexandrov","raw_affiliation_strings":["Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavel A Pevzner","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California , San Diego, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California , San Diego, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5078002589"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":9.5278,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.97964235,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"37","issue":"Supplement_1","first_page":"i196","last_page":"i204"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centromere","display_name":"Centromere","score":0.9584898352622986},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6649557948112488},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5435066819190979},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5230408906936646},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5106526017189026},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.497104674577713},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4858853220939636},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4608319401741028},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.39395207166671753},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32805901765823364},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1393691599369049},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12404951453208923}],"concepts":[{"id":"https://openalex.org/C63491729","wikidata":"https://www.wikidata.org/wiki/Q14762596","display_name":"Centromere","level":4,"score":0.9584898352622986},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6649557948112488},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5435066819190979},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5230408906936646},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5106526017189026},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.497104674577713},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4858853220939636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4608319401741028},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.39395207166671753},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32805901765823364},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1393691599369049},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12404951453208923}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002503","descriptor_name":"Centromere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002503","descriptor_name":"Centromere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002503","descriptor_name":"Centromere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab265","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab265","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i196/39620181/btab265.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34252949","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34252949","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8336445","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8336445","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab265","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab265","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i196/39620181/btab265.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2178630908","display_name":null,"funder_award_id":"73023672","funder_id":"https://openalex.org/F4320322515","funder_display_name":"Saint Petersburg State University"}],"funders":[{"id":"https://openalex.org/F4320322515","display_name":"Saint Petersburg State University","ror":"https://ror.org/023znxa73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3180132377.pdf","grobid_xml":"https://content.openalex.org/works/W3180132377.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W591448675","https://openalex.org/W1547966682","https://openalex.org/W1983642572","https://openalex.org/W2043866095","https://openalex.org/W2094746916","https://openalex.org/W2095259929","https://openalex.org/W2101765976","https://openalex.org/W2112902548","https://openalex.org/W2120990510","https://openalex.org/W2127322768","https://openalex.org/W2132510972","https://openalex.org/W2160636499","https://openalex.org/W2165064122","https://openalex.org/W2333358954","https://openalex.org/W2790208381","https://openalex.org/W2806629896","https://openalex.org/W2815423913","https://openalex.org/W2905151046","https://openalex.org/W2905753952","https://openalex.org/W2944627014","https://openalex.org/W2952626329","https://openalex.org/W2954989188","https://openalex.org/W2973089210","https://openalex.org/W2997049515","https://openalex.org/W3033675392","https://openalex.org/W3042374389","https://openalex.org/W3042599249","https://openalex.org/W3042933198","https://openalex.org/W3043322546","https://openalex.org/W3047598142","https://openalex.org/W3047638384","https://openalex.org/W3049406222","https://openalex.org/W3111336583","https://openalex.org/W3128198169","https://openalex.org/W3148425969","https://openalex.org/W3163990482"],"related_works":["https://openalex.org/W4387492829","https://openalex.org/W1983415836","https://openalex.org/W2009362775","https://openalex.org/W2038023588","https://openalex.org/W2015175351","https://openalex.org/W20126109","https://openalex.org/W4386219590","https://openalex.org/W1908751848","https://openalex.org/W1969895229","https://openalex.org/W2108497208"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}