{"id":"https://openalex.org/W3159344430","doi":"https://doi.org/10.1093/bioinformatics/btab249","title":"MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates","display_name":"MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates","publication_year":2021,"publication_date":"2021-04-19","ids":{"openalex":"https://openalex.org/W3159344430","doi":"https://doi.org/10.1093/bioinformatics/btab249","mag":"3159344430","pmid":"https://pubmed.ncbi.nlm.nih.gov/33944895"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab249","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab249","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067584576","display_name":"Michael Apostolides","orcid":"https://orcid.org/0000-0003-0014-2917"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Michael Apostolides","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102918964","display_name":"Yue Jiang","orcid":"https://orcid.org/0000-0002-9848-428X"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yue Jiang","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072844274","display_name":"Mia Husi\u0107","orcid":"https://orcid.org/0000-0001-7553-825X"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mia Husi\u0107","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061265510","display_name":"Robert Siddaway","orcid":"https://orcid.org/0000-0003-2013-9467"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert Siddaway","raw_affiliation_strings":["The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068881416","display_name":"Cynthia Hawkins","orcid":"https://orcid.org/0000-0003-2618-4402"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Cynthia Hawkins","raw_affiliation_strings":["Department of Laboratory Medicine and Pathobiology, University of Toronto , Toronto, ON, Canada","Division of Pathology, The Hospital for Sick Children , Toronto, ON, Canada","The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine and Pathobiology, University of Toronto , Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Division of Pathology, The Hospital for Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]},{"raw_affiliation_string":"The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027840785","display_name":"Andrei L. Turinsky","orcid":"https://orcid.org/0000-0002-5555-8461"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrei L Turinsky","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012113499","display_name":"Michael Brudno","orcid":"https://orcid.org/0000-0001-7947-2243"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Michael Brudno","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","Department of Computer Science, University of Toronto , Toronto, ON, Canada","Genetics and Genome Biology Program, The Hospital for Sick Children , Toronto, ON, Canada","University Health Network , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]},{"raw_affiliation_string":"Department of Computer Science, University of Toronto , Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Genetics and Genome Biology Program, The Hospital for Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]},{"raw_affiliation_string":"University Health Network , Toronto, ON, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069859137","display_name":"Arun Ramani","orcid":"https://orcid.org/0000-0002-8162-8523"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Arun K Ramani","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital For Sick Children , Toronto, ON, Canada","institution_ids":["https://openalex.org/I2801317318"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5069859137"],"corresponding_institution_ids":["https://openalex.org/I2801317318"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7318,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.68728211,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"37","issue":"19","first_page":"3144","last_page":"3151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7791311740875244},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.7351444959640503},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4998302459716797},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47699621319770813},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.4476904273033142},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4425339102745056},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4380404055118561},{"id":"https://openalex.org/keywords/majority-rule","display_name":"Majority rule","score":0.4208580553531647},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4160388112068176},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40999823808670044},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3605044484138489},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33416664600372314},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.07785183191299438}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7791311740875244},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.7351444959640503},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4998302459716797},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47699621319770813},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.4476904273033142},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4425339102745056},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4380404055118561},{"id":"https://openalex.org/C153668964","wikidata":"https://www.wikidata.org/wiki/Q27636","display_name":"Majority rule","level":2,"score":0.4208580553531647},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4160388112068176},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40999823808670044},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3605044484138489},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33416664600372314},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.07785183191299438},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab249","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab249","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33944895","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33944895","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1810761522","https://openalex.org/W1959574505","https://openalex.org/W2011548833","https://openalex.org/W2027963144","https://openalex.org/W2029623390","https://openalex.org/W2042337609","https://openalex.org/W2057271193","https://openalex.org/W2061054107","https://openalex.org/W2064469303","https://openalex.org/W2076500257","https://openalex.org/W2082534286","https://openalex.org/W2088612061","https://openalex.org/W2096173343","https://openalex.org/W2103569192","https://openalex.org/W2106425267","https://openalex.org/W2109158187","https://openalex.org/W2112493011","https://openalex.org/W2124887618","https://openalex.org/W2128142447","https://openalex.org/W2136452881","https://openalex.org/W2136983648","https://openalex.org/W2148802388","https://openalex.org/W2156274673","https://openalex.org/W2162259262","https://openalex.org/W2166422007","https://openalex.org/W2173001211","https://openalex.org/W2175981288","https://openalex.org/W2205690268","https://openalex.org/W2271526763","https://openalex.org/W2272111630","https://openalex.org/W2440007176","https://openalex.org/W2597005785","https://openalex.org/W2607938959","https://openalex.org/W2609761857","https://openalex.org/W2765689414","https://openalex.org/W2773783066","https://openalex.org/W2796292093","https://openalex.org/W2799811249","https://openalex.org/W2910434518","https://openalex.org/W2931705073","https://openalex.org/W2949355358","https://openalex.org/W2980759299","https://openalex.org/W3002469446","https://openalex.org/W3005404186","https://openalex.org/W6736651273"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2329895846"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-07T14:57:38.498316","created_date":"2025-10-10T00:00:00"}
