{"id":"https://openalex.org/W3163290491","doi":"https://doi.org/10.1093/bioinformatics/btab245","title":"scConnect: a method for exploratory analysis of cell\u2013cell communication based on single-cell RNA-sequencing data","display_name":"scConnect: a method for exploratory analysis of cell\u2013cell communication based on single-cell RNA-sequencing data","publication_year":2021,"publication_date":"2021-04-15","ids":{"openalex":"https://openalex.org/W3163290491","doi":"https://doi.org/10.1093/bioinformatics/btab245","mag":"3163290491","pmid":"https://pubmed.ncbi.nlm.nih.gov/33974001"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab245","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3501/40853971/btab245.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3501/40853971/btab245.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058474530","display_name":"Jon E. T. Jakobsson","orcid":"https://orcid.org/0000-0003-3845-5417"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jon E T Jakobsson","raw_affiliation_strings":["Department of Neuroscience, Uppsala University , 75124 Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Uppsala University , 75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Department of Pharmaceutical Biosciences, Uppsala University , 75124 Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences, Uppsala University , 75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024423933","display_name":"Malin C. Lagerstr\u00f6m","orcid":"https://orcid.org/0000-0002-9086-2805"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Malin C Lagerstr\u00f6m","raw_affiliation_strings":["Department of Neuroscience, Uppsala University , 75124 Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Uppsala University , 75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024423933"],"corresponding_institution_ids":["https://openalex.org/I123387679"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7698,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.85344327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"20","first_page":"3501","last_page":"3508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5955685973167419},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5807343125343323},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5765745639801025},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5131290555000305},{"id":"https://openalex.org/keywords/exploratory-data-analysis","display_name":"Exploratory data analysis","score":0.44178307056427},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3457004427909851},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26021283864974976},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17405200004577637},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16584309935569763}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5955685973167419},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5807343125343323},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5765745639801025},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5131290555000305},{"id":"https://openalex.org/C120894424","wikidata":"https://www.wikidata.org/wiki/Q1322871","display_name":"Exploratory data analysis","level":2,"score":0.44178307056427},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3457004427909851},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26021283864974976},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17405200004577637},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16584309935569763},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab245","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3501/40853971/btab245.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33974001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33974001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:DiVA.org:uu-456616","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-456616","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:europepmc.org:7434654","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8545319","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8545319","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8545319","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab245","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/20/3501/40853971/btab245.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5693769876","display_name":null,"funder_award_id":"2016-00851","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320320385","display_name":"Brain Foundation","ror":"https://ror.org/01e3kxx79"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320324119","display_name":"Uppsala Universitet","ror":"https://ror.org/048a87296"},{"id":"https://openalex.org/F4320325677","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3163290491.pdf"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1612007229","https://openalex.org/W1966468773","https://openalex.org/W1969398402","https://openalex.org/W1986986419","https://openalex.org/W1991922479","https://openalex.org/W1995683190","https://openalex.org/W2004619369","https://openalex.org/W2008208329","https://openalex.org/W2013223495","https://openalex.org/W2016097940","https://openalex.org/W2017279410","https://openalex.org/W2018703555","https://openalex.org/W2029503266","https://openalex.org/W2052685738","https://openalex.org/W2059207468","https://openalex.org/W2070602352","https://openalex.org/W2072148763","https://openalex.org/W2078191693","https://openalex.org/W2082556611","https://openalex.org/W2090773289","https://openalex.org/W2121606214","https://openalex.org/W2125045349","https://openalex.org/W2129094043","https://openalex.org/W2130687290","https://openalex.org/W2131058184","https://openalex.org/W2144014661","https://openalex.org/W2150949781","https://openalex.org/W2154280336","https://openalex.org/W2159675211","https://openalex.org/W2168164296","https://openalex.org/W2177345733","https://openalex.org/W2181255501","https://openalex.org/W2181523240","https://openalex.org/W2211104821","https://openalex.org/W2257767486","https://openalex.org/W2284118197","https://openalex.org/W2332292689","https://openalex.org/W2377105706","https://openalex.org/W2503097302","https://openalex.org/W2592722082","https://openalex.org/W2611412176","https://openalex.org/W2626990934","https://openalex.org/W2756422714","https://openalex.org/W2771328536","https://openalex.org/W2783252067","https://openalex.org/W2786581383","https://openalex.org/W2794480084","https://openalex.org/W2800392236","https://openalex.org/W2885927965","https://openalex.org/W2900411771","https://openalex.org/W2906180136","https://openalex.org/W2929108602","https://openalex.org/W2944545583","https://openalex.org/W2949225171","https://openalex.org/W2949237386","https://openalex.org/W2949693884","https://openalex.org/W2993523018","https://openalex.org/W3002417821","https://openalex.org/W3006235880","https://openalex.org/W3007935255","https://openalex.org/W3023697651","https://openalex.org/W3097889658","https://openalex.org/W6678702229","https://openalex.org/W6695678499","https://openalex.org/W6748039500","https://openalex.org/W6772834656"],"related_works":["https://openalex.org/W2513589746","https://openalex.org/W2153919606","https://openalex.org/W2003194288","https://openalex.org/W2213189664","https://openalex.org/W2074002899","https://openalex.org/W2062254828","https://openalex.org/W4237480606","https://openalex.org/W2936968863","https://openalex.org/W1971792277","https://openalex.org/W3026240506"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":1}],"updated_date":"2026-01-15T23:16:33.117629","created_date":"2025-10-10T00:00:00"}
