{"id":"https://openalex.org/W3158548253","doi":"https://doi.org/10.1093/bioinformatics/btab240","title":"Fundamental gene network rewiring at the second order within and across mammalian systems","display_name":"Fundamental gene network rewiring at the second order within and across mammalian systems","publication_year":2021,"publication_date":"2021-04-09","ids":{"openalex":"https://openalex.org/W3158548253","doi":"https://doi.org/10.1093/bioinformatics/btab240","mag":"3158548253","pmid":"https://pubmed.ncbi.nlm.nih.gov/33950233"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab240","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab240","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085898035","display_name":"Ruby Sharma","orcid":"https://orcid.org/0000-0002-8441-0415"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruby Sharma","raw_affiliation_strings":["Department of Computer Science, New Mexico State University , Las Cruces, NM 88003, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University , Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076579441","display_name":"Sajal Kumar","orcid":"https://orcid.org/0000-0003-0930-1582"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sajal Kumar","raw_affiliation_strings":["Department of Computer Science, New Mexico State University , Las Cruces, NM 88003, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University , Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082897828","display_name":"Mingzhou Song","orcid":"https://orcid.org/0000-0002-6883-6547"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mingzhou Song","raw_affiliation_strings":["Department of Computer Science, New Mexico State University , Las Cruces, NM 88003, USA","Molecular Biology and Interdisciplinary Life Sciences Graduate Program, New Mexico State University , Las Cruces, NM 88003, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University , Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Molecular Biology and Interdisciplinary Life Sciences Graduate Program, New Mexico State University , Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082897828"],"corresponding_institution_ids":["https://openalex.org/I10052268"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4067,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.58633795,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"37","issue":"19","first_page":"3293","last_page":"3301"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7066997289657593},{"id":"https://openalex.org/keywords/test-statistic","display_name":"Test statistic","score":0.5769479870796204},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.5435918569564819},{"id":"https://openalex.org/keywords/null-hypothesis","display_name":"Null hypothesis","score":0.4888979494571686},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48812875151634216},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.47808074951171875},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.4271726906299591},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4237535297870636},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40499937534332275},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3202395439147949},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28493165969848633},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.18137899041175842},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1288939118385315}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7066997289657593},{"id":"https://openalex.org/C169857963","wikidata":"https://www.wikidata.org/wiki/Q1461038","display_name":"Test statistic","level":3,"score":0.5769479870796204},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.5435918569564819},{"id":"https://openalex.org/C191988596","wikidata":"https://www.wikidata.org/wiki/Q628374","display_name":"Null hypothesis","level":2,"score":0.4888979494571686},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48812875151634216},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.47808074951171875},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.4271726906299591},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4237535297870636},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40499937534332275},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3202395439147949},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28493165969848633},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.18137899041175842},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1288939118385315}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab240","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab240","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33950233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33950233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G5798706238","display_name":null,"funder_award_id":"2016-51181-25408","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G592539251","display_name":null,"funder_award_id":"1661331","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W1609044025","https://openalex.org/W1859117663","https://openalex.org/W1965055200","https://openalex.org/W1965752870","https://openalex.org/W1966185862","https://openalex.org/W1985593448","https://openalex.org/W1986223165","https://openalex.org/W1988568961","https://openalex.org/W1990321277","https://openalex.org/W1991909246","https://openalex.org/W2001603817","https://openalex.org/W2002287244","https://openalex.org/W2006778392","https://openalex.org/W2008873787","https://openalex.org/W2009597834","https://openalex.org/W2012757283","https://openalex.org/W2018658338","https://openalex.org/W2023910541","https://openalex.org/W2035087026","https://openalex.org/W2037580712","https://openalex.org/W2066113694","https://openalex.org/W2069717852","https://openalex.org/W2070021921","https://openalex.org/W2077100468","https://openalex.org/W2080477348","https://openalex.org/W2083209245","https://openalex.org/W2108156593","https://openalex.org/W2108267931","https://openalex.org/W2110065044","https://openalex.org/W2121653135","https://openalex.org/W2125408642","https://openalex.org/W2126892676","https://openalex.org/W2127589614","https://openalex.org/W2141926729","https://openalex.org/W2148348270","https://openalex.org/W2152492589","https://openalex.org/W2155653061","https://openalex.org/W2158910699","https://openalex.org/W2159482845","https://openalex.org/W2160368943","https://openalex.org/W2160420391","https://openalex.org/W2223041743","https://openalex.org/W2247766769","https://openalex.org/W2329878893","https://openalex.org/W2365295785","https://openalex.org/W2474747771","https://openalex.org/W2508001580","https://openalex.org/W2554705260","https://openalex.org/W2564474486","https://openalex.org/W2567334373","https://openalex.org/W2618716588","https://openalex.org/W2709195211","https://openalex.org/W2748577514","https://openalex.org/W2760456113","https://openalex.org/W2767901905","https://openalex.org/W2787994442","https://openalex.org/W2791559636","https://openalex.org/W2804526247","https://openalex.org/W2805309434","https://openalex.org/W2893722559","https://openalex.org/W2898981733","https://openalex.org/W2952963846","https://openalex.org/W2954492537","https://openalex.org/W2966268928","https://openalex.org/W2977723521","https://openalex.org/W2979871383","https://openalex.org/W2981478121","https://openalex.org/W3040182561","https://openalex.org/W4229668875","https://openalex.org/W4255783720","https://openalex.org/W4294216483","https://openalex.org/W6732067421","https://openalex.org/W6766149174","https://openalex.org/W6769107483","https://openalex.org/W6834026529"],"related_works":["https://openalex.org/W3015822731","https://openalex.org/W2049531272","https://openalex.org/W1826709224","https://openalex.org/W2488034322","https://openalex.org/W2135903028","https://openalex.org/W1970221037","https://openalex.org/W2913739054","https://openalex.org/W1449571481","https://openalex.org/W2419512033","https://openalex.org/W1986870412"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2026-04-20T07:46:08.049788","created_date":"2025-10-10T00:00:00"}
