{"id":"https://openalex.org/W3115554950","doi":"https://doi.org/10.1093/bioinformatics/btab189","title":"The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes","display_name":"The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes","publication_year":2021,"publication_date":"2021-03-17","ids":{"openalex":"https://openalex.org/W3115554950","doi":"https://doi.org/10.1093/bioinformatics/btab189","mag":"3115554950","pmid":"https://pubmed.ncbi.nlm.nih.gov/33742655"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab189","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab189","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2012.13062","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071344692","display_name":"Olivier Mailhot","orcid":"https://orcid.org/0000-0002-7533-4561"},"institutions":[{"id":"https://openalex.org/I4210096154","display_name":"Institute for Research in Immunology and Cancer","ror":"https://ror.org/00wj6x496","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210096154"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Olivier Mailhot","raw_affiliation_strings":["Department of Pharmacology and Physiology, Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal, QC H3T 1J4, Canada","Institute for Research in Immunology and Cancer (IRIC), Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal, QC H3T 1J4, Canada","Universit\u00e8 de Montreal"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacology and Physiology, Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal, QC H3T 1J4, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"Institute for Research in Immunology and Cancer (IRIC), Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal, QC H3T 1J4, Canada","institution_ids":["https://openalex.org/I4210096154","https://openalex.org/I70931966"]},{"raw_affiliation_string":"Universit\u00e8 de Montreal","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019812910","display_name":"Rafa\u00ebl Najmanovich","orcid":"https://orcid.org/0000-0002-6971-7224"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Rafael Najmanovich","raw_affiliation_strings":["Department of Pharmacology and Physiology, Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal, QC H3T 1J4, Canada","Universit\u00e8 de Montreal"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacology and Physiology, Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal, QC H3T 1J4, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"Universit\u00e8 de Montreal","institution_ids":["https://openalex.org/I70931966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019812910"],"corresponding_institution_ids":["https://openalex.org/I70931966"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0812,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.41393806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":"37","issue":"19","first_page":"3369","last_page":"3371"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8774418830871582},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6702945232391357},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.4720861613750458},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.43803995847702026},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3337612748146057},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2650548219680786}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8774418830871582},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6702945232391357},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.4720861613750458},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.43803995847702026},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3337612748146057},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2650548219680786},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab189","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab189","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33742655","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33742655","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2012.13062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2012.13062","pdf_url":"https://arxiv.org/pdf/2012.13062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3115554950","is_oa":true,"landing_page_url":"http://arxiv.org/pdf/2012.13062.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2012.13062","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2012.13062","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2012.13062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2012.13062","pdf_url":"https://arxiv.org/pdf/2012.13062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W15000766","https://openalex.org/W2013768168","https://openalex.org/W2029118067","https://openalex.org/W2047346757","https://openalex.org/W2056331547","https://openalex.org/W2061843940","https://openalex.org/W2063962473","https://openalex.org/W2083638958","https://openalex.org/W2101428076","https://openalex.org/W2113994268","https://openalex.org/W2122713363","https://openalex.org/W2150185619","https://openalex.org/W2469816127","https://openalex.org/W2951264695","https://openalex.org/W3110972717","https://openalex.org/W4254004052","https://openalex.org/W6819722063"],"related_works":["https://openalex.org/W2586822646","https://openalex.org/W3210534170","https://openalex.org/W2329526850","https://openalex.org/W2951145731","https://openalex.org/W2111042958","https://openalex.org/W3206826420","https://openalex.org/W2295059836","https://openalex.org/W2793188317","https://openalex.org/W2952837430","https://openalex.org/W2010353070","https://openalex.org/W2952457720","https://openalex.org/W2612829548","https://openalex.org/W195008344","https://openalex.org/W2763431406","https://openalex.org/W2763936395","https://openalex.org/W3197704529","https://openalex.org/W2023261473","https://openalex.org/W2119109208","https://openalex.org/W2105573149","https://openalex.org/W2782827041"],"abstract_inverted_index":{"https://github.com/gregorpatof/nrgten_package/.":[0]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
