{"id":"https://openalex.org/W3138383957","doi":"https://doi.org/10.1093/bioinformatics/btab177","title":"Queueing theory model of Krebs cycle","display_name":"Queueing theory model of Krebs cycle","publication_year":2021,"publication_date":"2021-03-12","ids":{"openalex":"https://openalex.org/W3138383957","doi":"https://doi.org/10.1093/bioinformatics/btab177","mag":"3138383957","pmid":"https://pubmed.ncbi.nlm.nih.gov/33724355"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab177","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab177","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075821459","display_name":"Sylwester M. Kloska","orcid":"https://orcid.org/0000-0002-5165-9302"},"institutions":[{"id":"https://openalex.org/I3019271933","display_name":"Nicolaus Copernicus University","ror":"https://ror.org/0102mm775","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933"]},{"id":"https://openalex.org/I4210148386","display_name":"Collegium Medicum in Bydgoszcz","ror":"https://ror.org/04c5jwj47","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933","https://openalex.org/I4210148386"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Sylwester Kloska","raw_affiliation_strings":["Faculty of Medicine, Nicolaus Copernicus University Ludwik Rydygier Collegium Medicum , 85-067 Bydgoszcz, Poland"],"raw_orcid":"https://orcid.org/0000-0002-5165-9302","affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Nicolaus Copernicus University Ludwik Rydygier Collegium Medicum , 85-067 Bydgoszcz, Poland","institution_ids":["https://openalex.org/I3019271933","https://openalex.org/I4210148386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008068058","display_name":"Krzysztof Pa\u0142czy\u0144ski","orcid":"https://orcid.org/0000-0003-3989-3400"},"institutions":[{"id":"https://openalex.org/I1300393620","display_name":"Bydgoszcz University of Science and Technology","ror":"https://ror.org/049eq0c58","country_code":"PL","type":"education","lineage":["https://openalex.org/I1300393620"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Krzysztof Pa\u0142czy\u0144ski","raw_affiliation_strings":["Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland","institution_ids":["https://openalex.org/I1300393620","https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056885263","display_name":"Tomasz Marciniak","orcid":"https://orcid.org/0000-0002-0862-8500"},"institutions":[{"id":"https://openalex.org/I1300393620","display_name":"Bydgoszcz University of Science and Technology","ror":"https://ror.org/049eq0c58","country_code":"PL","type":"education","lineage":["https://openalex.org/I1300393620"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tomasz Marciniak","raw_affiliation_strings":["Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland","institution_ids":["https://openalex.org/I1300393620","https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022889565","display_name":"Tomasz Tala\u015bka","orcid":"https://orcid.org/0000-0001-7252-8013"},"institutions":[{"id":"https://openalex.org/I1300393620","display_name":"Bydgoszcz University of Science and Technology","ror":"https://ror.org/049eq0c58","country_code":"PL","type":"education","lineage":["https://openalex.org/I1300393620"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tomasz Tala\u015bka","raw_affiliation_strings":["Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland","institution_ids":["https://openalex.org/I1300393620","https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112567267","display_name":"Marissa Nitz","orcid":null},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marissa Nitz","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Nebraska-Lincoln , Omaha, NE 68182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Nebraska-Lincoln , Omaha, NE 68182, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005490379","display_name":"Beata J. Wysocki","orcid":"https://orcid.org/0000-0001-9063-0126"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Beata J Wysocki","raw_affiliation_strings":["Department of Biology, University of Nebraska at Omaha , Omaha, NE 68182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Nebraska at Omaha , Omaha, NE 68182, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062716929","display_name":"Paul H. Davis","orcid":"https://orcid.org/0000-0002-0526-3841"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Davis","raw_affiliation_strings":["Department of Biology, University of Nebraska at Omaha , Omaha, NE 68182, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Nebraska at Omaha , Omaha, NE 68182, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068846447","display_name":"Tadeusz A. Wysocki","orcid":"https://orcid.org/0000-0001-7741-7603"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]},{"id":"https://openalex.org/I1300393620","display_name":"Bydgoszcz University of Science and Technology","ror":"https://ror.org/049eq0c58","country_code":"PL","type":"education","lineage":["https://openalex.org/I1300393620"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL","US"],"is_corresponding":true,"raw_author_name":"Tadeusz A Wysocki","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Nebraska-Lincoln , Omaha, NE 68182, USA","Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Nebraska-Lincoln , Omaha, NE 68182, USA","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Faculty of Telecommunications, Computer Science and Electrical Engineering, UTP University of Science and Technology , 85-796 Bydgoszcz, Poland","institution_ids":["https://openalex.org/I1300393620","https://openalex.org/I686019"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5068846447","https://openalex.org/A5075821459"],"corresponding_institution_ids":["https://openalex.org/I114395901","https://openalex.org/I1300393620","https://openalex.org/I3019271933","https://openalex.org/I4210148386","https://openalex.org/I686019"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9622,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.73122041,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"37","issue":"18","first_page":"2912","last_page":"2919"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.1720999926328659,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.1720999926328659,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14135","display_name":"Cancer and biochemical research","score":0.13349999487400055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12281","display_name":"Animal testing and alternatives","score":0.1120000034570694,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/queueing-theory","display_name":"Queueing theory","score":0.8195304274559021},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7493172883987427},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.47935253381729126},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.41237902641296387},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16421633958816528},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.12942463159561157}],"concepts":[{"id":"https://openalex.org/C22684755","wikidata":"https://www.wikidata.org/wiki/Q847526","display_name":"Queueing theory","level":2,"score":0.8195304274559021},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7493172883987427},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.47935253381729126},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.41237902641296387},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16421633958816528},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.12942463159561157}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002952","descriptor_name":"Citric Acid Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002952","descriptor_name":"Citric Acid Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002952","descriptor_name":"Citric Acid Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab177","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab177","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33724355","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33724355","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1513575313","https://openalex.org/W1608066004","https://openalex.org/W1802786708","https://openalex.org/W1979270237","https://openalex.org/W1990613392","https://openalex.org/W1999547014","https://openalex.org/W2000096351","https://openalex.org/W2004235182","https://openalex.org/W2006792487","https://openalex.org/W2011843627","https://openalex.org/W2014160475","https://openalex.org/W2024988671","https://openalex.org/W2026967508","https://openalex.org/W2034463423","https://openalex.org/W2036099201","https://openalex.org/W2052384272","https://openalex.org/W2061059838","https://openalex.org/W2074171009","https://openalex.org/W2089532778","https://openalex.org/W2090932822","https://openalex.org/W2097805771","https://openalex.org/W2102919205","https://openalex.org/W2108469278","https://openalex.org/W2125227081","https://openalex.org/W2129945601","https://openalex.org/W2140937954","https://openalex.org/W2141776893","https://openalex.org/W2141995738","https://openalex.org/W2146654374","https://openalex.org/W2155418451","https://openalex.org/W2155768459","https://openalex.org/W2156107840","https://openalex.org/W2171386471","https://openalex.org/W2171998898","https://openalex.org/W2183440315","https://openalex.org/W2346094579","https://openalex.org/W2412557323","https://openalex.org/W2462439856","https://openalex.org/W2616017058","https://openalex.org/W2766821438","https://openalex.org/W2767704856","https://openalex.org/W2790375897","https://openalex.org/W2884777624","https://openalex.org/W2895481093","https://openalex.org/W2904250082","https://openalex.org/W2973177496","https://openalex.org/W3016579572","https://openalex.org/W4213121121","https://openalex.org/W4244785210","https://openalex.org/W6630672029"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2183842793","https://openalex.org/W4255676640","https://openalex.org/W2485259751","https://openalex.org/W4236216870","https://openalex.org/W4243876796","https://openalex.org/W2485273903","https://openalex.org/W2482041988"],"abstract_inverted_index":{"MOTIVATION:":[0],"Queueing":[1],"theory":[2],"can":[3],"be":[4],"effective":[5],"in":[6,12,76,91,115,118],"simulating":[7],"biochemical":[8],"reactions":[9],"taking":[10],"place":[11],"living":[13],"cells,":[14],"and":[15,37,42,96],"the":[16,81],"article":[17,57],"paves":[18],"a":[19,24,31,59,83],"step":[20],"toward":[21],"development":[22],"of":[23,27,48,72,88],"comprehensive":[25],"model":[26,32,62,68],"cell":[28],"metabolism.":[29],"Such":[30],"could":[33],"help":[34],"to":[35,52],"accelerate":[36],"reduce":[38],"costs":[39],"for":[40,70,110],"developing":[41],"testing":[43],"investigational":[44],"drugs":[45],"reducing":[46],"number":[47],"laboratory":[49],"animals":[50],"needed":[51],"evaluate":[53],"drugs.":[54],"RESULTS:":[55],"The":[56,67,104],"presents":[58],"Krebs":[60,92],"cycle":[61,93],"based":[63],"on":[64],"queueing":[65],"theory.":[66],"allows":[69],"tracking":[71],"metabolites":[73],"concentration":[74],"changes":[75],"real":[77],"time.":[78],"To":[79],"validate":[80],"model,":[82],"drug-induced":[84],"inhibition":[85],"affecting":[86],"activity":[87],"enzymes":[89],"involved":[90],"was":[94],"simulated":[95],"compared":[97],"with":[98],"available":[99,109,128],"experimental":[100],"data.":[101],"AVAILABILITYAND":[102],"IMPLEMENTATION:":[103],"source":[105],"code":[106],"is":[107],"freely":[108],"download":[111],"at":[112,129],"https://github.com/UTP-WTIiE/KrebsCycleUsingQueueingTheory,":[113],"implemented":[114],"C#":[116],"supported":[117],"Linux":[119],"or":[120],"MS":[121],"Windows.":[122],"SUPPLEMENTARY":[123],"INFORMATION:":[124],"Supplementary":[125],"data":[126],"are":[127],"Bioinformatics":[130],"online.":[131]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
