{"id":"https://openalex.org/W3134084134","doi":"https://doi.org/10.1093/bioinformatics/btab147","title":"DeepViral: prediction of novel virus\u2013host interactions from protein sequences and infectious disease phenotypes","display_name":"DeepViral: prediction of novel virus\u2013host interactions from protein sequences and infectious disease phenotypes","publication_year":2021,"publication_date":"2021-03-01","ids":{"openalex":"https://openalex.org/W3134084134","doi":"https://doi.org/10.1093/bioinformatics/btab147","mag":"3134084134","pmid":"https://pubmed.ncbi.nlm.nih.gov/33682875"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab147","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/17/2722/40342757/btab147.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/17/2722/40342757/btab147.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054816188","display_name":"Wang Liu-wei","orcid":"https://orcid.org/0000-0002-9872-4140"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Wang Liu-Wei","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069397549","display_name":"\u015eenay Kafkas","orcid":"https://orcid.org/0000-0001-7509-5786"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"\u015eenay Kafkas","raw_affiliation_strings":["Computational Bioscience Research Center, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100450148","display_name":"Jun Chen","orcid":"https://orcid.org/0000-0001-8883-0970"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Jun Chen","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024419954","display_name":"Nicholas J Dimonaco","orcid":"https://orcid.org/0000-0002-3808-206X"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas J. Dimonaco","raw_affiliation_strings":["Institute of Biological, Environmental and Rural Sciences, Aberystwyth University , Wales SY23 3BQ, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences, Aberystwyth University , Wales SY23 3BQ, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035252549","display_name":"Jesper Tegn\u00e9r","orcid":"https://orcid.org/0000-0002-9568-5588"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Jesper Tegn\u00e9r","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computational Bioscience Research Center, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5043808311"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.9856,"has_fulltext":true,"cited_by_count":69,"citation_normalized_percentile":{"value":0.95109683,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"37","issue":"17","first_page":"2722","last_page":"2729"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.7242610454559326},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5897318124771118},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.5811622142791748},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5178421139717102},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5109004378318787},{"id":"https://openalex.org/keywords/clinical-phenotype","display_name":"Clinical phenotype","score":0.4539416432380676},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.44748127460479736},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4312008023262024},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41974273324012756},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.360478937625885},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2542579174041748},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2067962884902954},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15280184149742126}],"concepts":[{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.7242610454559326},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5897318124771118},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.5811622142791748},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5178421139717102},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5109004378318787},{"id":"https://openalex.org/C3020646490","wikidata":"https://www.wikidata.org/wiki/Q25203551","display_name":"Clinical phenotype","level":4,"score":0.4539416432380676},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.44748127460479736},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4312008023262024},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41974273324012756},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.360478937625885},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2542579174041748},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2067962884902954},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15280184149742126},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab147","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/17/2722/40342757/btab147.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33682875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33682875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.kaust.edu.sa:10754/668043","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/668043","pdf_url":"http://hdl.handle.net/10754/668043","source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:7322603","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8428617","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8428617","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8428617","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab147","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/17/2722/40342757/btab147.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2344873991","display_name":null,"funder_award_id":"URF/1/3790-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3134084134.pdf","grobid_xml":"https://content.openalex.org/works/W3134084134.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W1880027388","https://openalex.org/W1967630964","https://openalex.org/W1974896839","https://openalex.org/W1975138006","https://openalex.org/W2011763379","https://openalex.org/W2012361142","https://openalex.org/W2023159617","https://openalex.org/W2025625539","https://openalex.org/W2032243072","https://openalex.org/W2042301222","https://openalex.org/W2073831807","https://openalex.org/W2084168100","https://openalex.org/W2095705004","https://openalex.org/W2096525273","https://openalex.org/W2098223336","https://openalex.org/W2099364528","https://openalex.org/W2099688794","https://openalex.org/W2103017472","https://openalex.org/W2105656400","https://openalex.org/W2112822002","https://openalex.org/W2127435093","https://openalex.org/W2131858707","https://openalex.org/W2136265964","https://openalex.org/W2143219956","https://openalex.org/W2144787399","https://openalex.org/W2146495783","https://openalex.org/W2158191506","https://openalex.org/W2158698691","https://openalex.org/W2167898988","https://openalex.org/W2177233988","https://openalex.org/W2179498003","https://openalex.org/W2195485567","https://openalex.org/W2272509401","https://openalex.org/W2362355543","https://openalex.org/W2465613542","https://openalex.org/W2585432400","https://openalex.org/W2597478663","https://openalex.org/W2604272474","https://openalex.org/W2604808360","https://openalex.org/W2605099106","https://openalex.org/W2705861159","https://openalex.org/W2779933443","https://openalex.org/W2786189816","https://openalex.org/W2799259690","https://openalex.org/W2802984372","https://openalex.org/W2806516047","https://openalex.org/W2885821429","https://openalex.org/W2900569176","https://openalex.org/W2901332105","https://openalex.org/W2904322551","https://openalex.org/W2957436444","https://openalex.org/W2966590054","https://openalex.org/W2996370819","https://openalex.org/W2998220730","https://openalex.org/W3008443627","https://openalex.org/W3014941429","https://openalex.org/W3019170348","https://openalex.org/W3022285953","https://openalex.org/W3031411888","https://openalex.org/W3037029628","https://openalex.org/W3049734898","https://openalex.org/W3083163994","https://openalex.org/W3091928167","https://openalex.org/W3092613928","https://openalex.org/W3098485826","https://openalex.org/W3099272318","https://openalex.org/W3115832826","https://openalex.org/W3116572281","https://openalex.org/W3136918052","https://openalex.org/W4236358448","https://openalex.org/W4250297812","https://openalex.org/W6674330103","https://openalex.org/W6775267477","https://openalex.org/W6775365122","https://openalex.org/W6784051774"],"related_works":["https://openalex.org/W3164771895","https://openalex.org/W29071608","https://openalex.org/W2161088626","https://openalex.org/W2604464132","https://openalex.org/W3029893540","https://openalex.org/W2314682585","https://openalex.org/W2313584493","https://openalex.org/W2135667114","https://openalex.org/W2794847428","https://openalex.org/W2110968082"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":10}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
