{"id":"https://openalex.org/W3133711058","doi":"https://doi.org/10.1093/bioinformatics/btab146","title":"ClassifyTE: a stacking-based prediction of hierarchical classification of transposable elements","display_name":"ClassifyTE: a stacking-based prediction of hierarchical classification of transposable elements","publication_year":2021,"publication_date":"2021-03-01","ids":{"openalex":"https://openalex.org/W3133711058","doi":"https://doi.org/10.1093/bioinformatics/btab146","mag":"3133711058","pmid":"https://pubmed.ncbi.nlm.nih.gov/33682878"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab146","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab146","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069826842","display_name":"Manisha Panta","orcid":null},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manisha Panta","raw_affiliation_strings":["Department of Computer Science, University of New Orleans , New Orleans, LA 70148, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans , New Orleans, LA 70148, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000961605","display_name":"Avdesh Mishra","orcid":"https://orcid.org/0000-0001-9666-8715"},"institutions":[{"id":"https://openalex.org/I181414168","display_name":"Texas A&M University \u2013 Kingsville","ror":"https://ror.org/05abs3w97","country_code":"US","type":"education","lineage":["https://openalex.org/I181414168"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avdesh Mishra","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, Texas A&M University-Kingsville , Kingsville, TX 78363, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Texas A&M University-Kingsville , Kingsville, TX 78363, USA","institution_ids":["https://openalex.org/I181414168"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055092646","display_name":"Md Tamjidul Hoque","orcid":"https://orcid.org/0000-0002-0110-2194"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Md Tamjidul Hoque","raw_affiliation_strings":["Department of Computer Science, University of New Orleans , New Orleans, LA 70148, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans , New Orleans, LA 70148, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086244426","display_name":"Joel Atallah","orcid":"https://orcid.org/0000-0003-2425-2395"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joel Atallah","raw_affiliation_strings":["Department of Biological Sciences, University of New Orleans , New Orleans, LA 70148, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of New Orleans , New Orleans, LA 70148, USA","institution_ids":["https://openalex.org/I192396691"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5055092646","https://openalex.org/A5086244426"],"corresponding_institution_ids":["https://openalex.org/I192396691"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3791,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.80673471,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"37","issue":"17","first_page":"2529","last_page":"2536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.960099995136261,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5583646297454834},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.530953586101532},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.49544990062713623},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.42536115646362305},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4145541787147522},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3957618474960327},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3693397641181946},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33504271507263184},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2845245599746704},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25139978528022766}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5583646297454834},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.530953586101532},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.49544990062713623},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.42536115646362305},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4145541787147522},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3957618474960327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3693397641181946},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33504271507263184},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2845245599746704},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25139978528022766},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab146","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab146","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33682878","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33682878","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W1489537150","https://openalex.org/W1968969471","https://openalex.org/W1985258161","https://openalex.org/W2007262329","https://openalex.org/W2021344630","https://openalex.org/W2056132907","https://openalex.org/W2059864757","https://openalex.org/W2070493638","https://openalex.org/W2071501400","https://openalex.org/W2078749507","https://openalex.org/W2094913043","https://openalex.org/W2097998348","https://openalex.org/W2101234009","https://openalex.org/W2113506551","https://openalex.org/W2119821739","https://openalex.org/W2126326837","https://openalex.org/W2130212962","https://openalex.org/W2132141594","https://openalex.org/W2133671888","https://openalex.org/W2149684865","https://openalex.org/W2150766729","https://openalex.org/W2151554678","https://openalex.org/W2163584430","https://openalex.org/W2171003081","https://openalex.org/W2222590335","https://openalex.org/W2295598076","https://openalex.org/W2520368209","https://openalex.org/W2524126439","https://openalex.org/W2622577666","https://openalex.org/W2784023622","https://openalex.org/W2786089085","https://openalex.org/W2800198679","https://openalex.org/W2802190049","https://openalex.org/W2883467144","https://openalex.org/W2911964244","https://openalex.org/W2913356233","https://openalex.org/W2929793715","https://openalex.org/W2948484546","https://openalex.org/W2954332263","https://openalex.org/W2983181739","https://openalex.org/W3014858567","https://openalex.org/W3017049640","https://openalex.org/W3100344990","https://openalex.org/W3102476541","https://openalex.org/W4239510810","https://openalex.org/W4242841269","https://openalex.org/W4288289066","https://openalex.org/W4298069009","https://openalex.org/W4300874750","https://openalex.org/W6674385629","https://openalex.org/W6675354045","https://openalex.org/W6765482105","https://openalex.org/W6785734925"],"related_works":["https://openalex.org/W4237591666","https://openalex.org/W2103833188","https://openalex.org/W2164152191","https://openalex.org/W2053969879","https://openalex.org/W2082641564","https://openalex.org/W2107333779","https://openalex.org/W3108190435","https://openalex.org/W2790772971","https://openalex.org/W1964419640","https://openalex.org/W1906262170"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
