{"id":"https://openalex.org/W3133057805","doi":"https://doi.org/10.1093/bioinformatics/btab130","title":"A modeling framework for embedding-based predictions for compound\u2013viral protein activity","display_name":"A modeling framework for embedding-based predictions for compound\u2013viral protein activity","publication_year":2021,"publication_date":"2021-02-24","ids":{"openalex":"https://openalex.org/W3133057805","doi":"https://doi.org/10.1093/bioinformatics/btab130","mag":"3133057805","pmid":"https://pubmed.ncbi.nlm.nih.gov/33638345"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab130","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab130","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8163000","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055826525","display_name":"Raghvendra Mall","orcid":"https://orcid.org/0000-0003-1779-3150"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":true,"raw_author_name":"Raghvendra Mall","raw_affiliation_strings":["Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012462452","display_name":"Abdurrahman Elbasir","orcid":"https://orcid.org/0000-0003-1677-7845"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Abdurrahman Elbasir","raw_affiliation_strings":["ICT Division, College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"ICT Division, College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035228881","display_name":"Hossam Almeer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Hossam Almeer","raw_affiliation_strings":["Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037906104","display_name":"Zeyaul Islam","orcid":"https://orcid.org/0000-0002-5444-3910"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Zeyaul Islam","raw_affiliation_strings":["Diabetes Research Center, Qatar Biomedical Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"Diabetes Research Center, Qatar Biomedical Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010124716","display_name":"Prasanna R. Kolatkar","orcid":"https://orcid.org/0000-0003-4970-5944"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Prasanna R. Kolatkar","raw_affiliation_strings":["Diabetes Research Center, Qatar Biomedical Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"Diabetes Research Center, Qatar Biomedical Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037947876","display_name":"Sanjay Chawla","orcid":"https://orcid.org/0000-0002-8102-2572"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Sanjay Chawla","raw_affiliation_strings":["Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089902375","display_name":"Ehsan Ullah","orcid":"https://orcid.org/0000-0002-9881-6731"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":true,"raw_author_name":"Ehsan Ullah","raw_affiliation_strings":["Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar"],"affiliations":[{"raw_affiliation_string":"Digital Health and Precision Medicine Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5055826525","https://openalex.org/A5089902375"],"corresponding_institution_ids":["https://openalex.org/I4210144839"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2117,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.81676759,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"17","first_page":"2544","last_page":"2555"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6064513325691223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6059570908546448},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.504135251045227},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.48787593841552734},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.47978144884109497},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.45802128314971924},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4282341003417969},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3971972167491913},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3890966773033142},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2596519887447357},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.24234095215797424},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2003621757030487},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1547648310661316},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10711181163787842}],"concepts":[{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6064513325691223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6059570908546448},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.504135251045227},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.48787593841552734},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.47978144884109497},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.45802128314971924},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4282341003417969},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3971972167491913},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3890966773033142},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2596519887447357},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.24234095215797424},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2003621757030487},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1547648310661316},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10711181163787842},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab130","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab130","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33638345","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33638345","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8163000","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8163000","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8163000","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8163000","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W606561187","https://openalex.org/W1488329660","https://openalex.org/W1538131130","https://openalex.org/W1596717185","https://openalex.org/W1669302834","https://openalex.org/W1678356000","https://openalex.org/W1981276685","https://openalex.org/W1986240377","https://openalex.org/W2067563600","https://openalex.org/W2096525273","https://openalex.org/W2096864392","https://openalex.org/W2101234009","https://openalex.org/W2122538988","https://openalex.org/W2148853951","https://openalex.org/W2154139219","https://openalex.org/W2155300042","https://openalex.org/W2177317049","https://openalex.org/W2214665483","https://openalex.org/W2292021561","https://openalex.org/W2557283755","https://openalex.org/W2558999090","https://openalex.org/W2612690371","https://openalex.org/W2661779417","https://openalex.org/W2765224015","https://openalex.org/W2766578745","https://openalex.org/W2767891136","https://openalex.org/W2794004073","https://openalex.org/W2805887458","https://openalex.org/W2807792492","https://openalex.org/W2896002881","https://openalex.org/W2900903885","https://openalex.org/W2911964244","https://openalex.org/W2948054370","https://openalex.org/W2949956784","https://openalex.org/W2950144725","https://openalex.org/W2963858333","https://openalex.org/W2964015378","https://openalex.org/W2980279728","https://openalex.org/W2980655992","https://openalex.org/W2989848927","https://openalex.org/W3008443627","https://openalex.org/W3011072970","https://openalex.org/W3012994592","https://openalex.org/W3014067025","https://openalex.org/W3016084006","https://openalex.org/W3022285953","https://openalex.org/W3027630905","https://openalex.org/W3035302862","https://openalex.org/W3036068078","https://openalex.org/W3041467169","https://openalex.org/W3043379468","https://openalex.org/W3044927477","https://openalex.org/W3090065774","https://openalex.org/W3090735635","https://openalex.org/W3092982314","https://openalex.org/W3094946599","https://openalex.org/W3096057929","https://openalex.org/W3102648521","https://openalex.org/W3116865743","https://openalex.org/W3158868742","https://openalex.org/W4210702584","https://openalex.org/W4235413268","https://openalex.org/W4239678514","https://openalex.org/W4246646014","https://openalex.org/W4252672146","https://openalex.org/W4289237578","https://openalex.org/W4297733535","https://openalex.org/W6632100814","https://openalex.org/W6675354045","https://openalex.org/W6688357764","https://openalex.org/W6726873649","https://openalex.org/W6752083957","https://openalex.org/W6756793339","https://openalex.org/W6762970533","https://openalex.org/W6774926627","https://openalex.org/W6776019886","https://openalex.org/W6783508911","https://openalex.org/W6784157000","https://openalex.org/W6784598299","https://openalex.org/W6814139053"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4320009247","https://openalex.org/W4206422705","https://openalex.org/W3186872001","https://openalex.org/W3174741986","https://openalex.org/W4389861022"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2021-03-01T00:00:00"}