{"id":"https://openalex.org/W3130458053","doi":"https://doi.org/10.1093/bioinformatics/btab121","title":"BloodGen3Module: blood transcriptional module repertoire analysis and visualization using R","display_name":"BloodGen3Module: blood transcriptional module repertoire analysis and visualization using R","publication_year":2021,"publication_date":"2021-02-23","ids":{"openalex":"https://openalex.org/W3130458053","doi":"https://doi.org/10.1093/bioinformatics/btab121","mag":"3130458053","pmid":"https://pubmed.ncbi.nlm.nih.gov/33624743"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab121","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab121","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8388021","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024123563","display_name":"Darawan Rinchai","orcid":"https://orcid.org/0000-0001-8851-7730"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Darawan Rinchai","raw_affiliation_strings":["Research branch, Sidra Medicine , Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Research branch, Sidra Medicine , Doha, Qatar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071478773","display_name":"Jessica Roelands","orcid":"https://orcid.org/0000-0003-3631-2041"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jessica Roelands","raw_affiliation_strings":["Research branch, Sidra Medicine , Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Research branch, Sidra Medicine , Doha, Qatar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087053249","display_name":"Mohammed Toufiq","orcid":"https://orcid.org/0000-0002-6368-6746"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mohammed Toufiq","raw_affiliation_strings":["Research branch, Sidra Medicine , Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Research branch, Sidra Medicine , Doha, Qatar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039036917","display_name":"Wouter Hendrickx","orcid":"https://orcid.org/0000-0002-7649-5092"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wouter Hendrickx","raw_affiliation_strings":["Research branch, Sidra Medicine , Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Research branch, Sidra Medicine , Doha, Qatar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050586338","display_name":"Matthew C. Altman","orcid":"https://orcid.org/0000-0002-1784-8505"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4391012615","display_name":"Benaroya Research Institute","ror":"https://ror.org/04j9rp686","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I2802797007","https://openalex.org/I4210118434","https://openalex.org/I4391012615"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew C Altman","raw_affiliation_strings":["Division of Allergy and Infectious Diseases, University of Washington , Seattle, WA, 98195, USA","Systems Immunology, Benaroya Research Institute , Seattle, WA, 98101, USA","Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, 98195, USA; Systems Immunology, Benaroya Research Institute, Seattle, WA, 98101, USA"],"affiliations":[{"raw_affiliation_string":"Division of Allergy and Infectious Diseases, University of Washington , Seattle, WA, 98195, USA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"Systems Immunology, Benaroya Research Institute , Seattle, WA, 98101, USA","institution_ids":["https://openalex.org/I4391012615"]},{"raw_affiliation_string":"Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, 98195, USA; Systems Immunology, Benaroya Research Institute, Seattle, WA, 98101, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071591293","display_name":"Davide Bedognetti","orcid":"https://orcid.org/0000-0002-5857-773X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Davide Bedognetti","raw_affiliation_strings":["Research branch, Sidra Medicine , Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Research branch, Sidra Medicine , Doha, Qatar","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022563979","display_name":"Damien Chaussabel","orcid":"https://orcid.org/0000-0002-6131-7242"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Damien Chaussabel","raw_affiliation_strings":["Research branch, Sidra Medicine , Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Research branch, Sidra Medicine , Doha, Qatar","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5024123563"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2775,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.8900733,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"37","issue":"16","first_page":"2382","last_page":"2389"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.8162293434143066},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7255409359931946},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6971747875213623},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6785730719566345},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6138335466384888},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44966378808021545},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33356237411499023},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24377059936523438},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21813511848449707},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20362386107444763}],"concepts":[{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.8162293434143066},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7255409359931946},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6971747875213623},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6785730719566345},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6138335466384888},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44966378808021545},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33356237411499023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24377059936523438},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21813511848449707},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20362386107444763},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab121","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab121","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33624743","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33624743","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8388021","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8388021","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8388021","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8388021","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G693545348","display_name":null,"funder_award_id":"U01AI082110","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1779647662","https://openalex.org/W1826120111","https://openalex.org/W1942197038","https://openalex.org/W1966327575","https://openalex.org/W1969218538","https://openalex.org/W1974767214","https://openalex.org/W1988785295","https://openalex.org/W1994488319","https://openalex.org/W1997083516","https://openalex.org/W1997163824","https://openalex.org/W2020341821","https://openalex.org/W2030267793","https://openalex.org/W2037665605","https://openalex.org/W2052633053","https://openalex.org/W2072367332","https://openalex.org/W2075810666","https://openalex.org/W2086209183","https://openalex.org/W2100230706","https://openalex.org/W2109543073","https://openalex.org/W2150817630","https://openalex.org/W2150892663","https://openalex.org/W2150932450","https://openalex.org/W2166106092","https://openalex.org/W2170351296","https://openalex.org/W2577490495","https://openalex.org/W2605996289","https://openalex.org/W2889765367","https://openalex.org/W2913280734","https://openalex.org/W2914193935","https://openalex.org/W2924745373","https://openalex.org/W2954626553","https://openalex.org/W2957376989","https://openalex.org/W3046237435","https://openalex.org/W3100153578","https://openalex.org/W3110165525","https://openalex.org/W3110809804","https://openalex.org/W4211141028","https://openalex.org/W6684971291"],"related_works":["https://openalex.org/W4255048859","https://openalex.org/W3120300186","https://openalex.org/W2084831119","https://openalex.org/W4389385869","https://openalex.org/W4378635687","https://openalex.org/W2055491483","https://openalex.org/W2278124082","https://openalex.org/W2019758535","https://openalex.org/W2026305825","https://openalex.org/W2093107729"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
