{"id":"https://openalex.org/W3134791379","doi":"https://doi.org/10.1093/bioinformatics/btab119","title":"QuArray: an application for tissue array whole slide image export and signal analysis","display_name":"QuArray: an application for tissue array whole slide image export and signal analysis","publication_year":2021,"publication_date":"2021-03-02","ids":{"openalex":"https://openalex.org/W3134791379","doi":"https://doi.org/10.1093/bioinformatics/btab119","mag":"3134791379","pmid":"https://pubmed.ncbi.nlm.nih.gov/33690813"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab119","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab119","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://discovery.ucl.ac.uk/10191397/1/Ahmed_QuArray_formatted__preprint%20for%20REF.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070383977","display_name":"Callum Arthurs","orcid":"https://orcid.org/0000-0001-8508-3754"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I4210110827","display_name":"Prostate Cancer Research","ror":"https://ror.org/01wm3c497","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210110827"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Callum Arthurs","raw_affiliation_strings":["Prostate Cancer Research Centre at the Centre for Stem Cells and Regenerative Medicine, King\u2019s College London , SE1 9RT London, UK"],"affiliations":[{"raw_affiliation_string":"Prostate Cancer Research Centre at the Centre for Stem Cells and Regenerative Medicine, King\u2019s College London , SE1 9RT London, UK","institution_ids":["https://openalex.org/I4210110827","https://openalex.org/I183935753"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058579733","display_name":"Aamir Ahmed","orcid":"https://orcid.org/0000-0001-7405-5336"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I4210110827","display_name":"Prostate Cancer Research","ror":"https://ror.org/01wm3c497","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210110827"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aamir Ahmed","raw_affiliation_strings":["Prostate Cancer Research Centre at the Centre for Stem Cells and Regenerative Medicine, King\u2019s College London , SE1 9RT London, UK"],"affiliations":[{"raw_affiliation_string":"Prostate Cancer Research Centre at the Centre for Stem Cells and Regenerative Medicine, King\u2019s College London , SE1 9RT London, UK","institution_ids":["https://openalex.org/I4210110827","https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5070383977"],"corresponding_institution_ids":["https://openalex.org/I183935753","https://openalex.org/I4210110827"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01680441,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":"18","first_page":"3082","last_page":"3083"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7551252245903015},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.7059295177459717},{"id":"https://openalex.org/keywords/signal","display_name":"SIGNAL (programming language)","score":0.5028969645500183},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48483359813690186},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.44524332880973816},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.44217023253440857},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.4371316432952881},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.43100643157958984},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3872661590576172},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3564050793647766},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35636574029922485},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34680116176605225},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.29741814732551575},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.27815625071525574},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.15815088152885437},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13948211073875427}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7551252245903015},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.7059295177459717},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.5028969645500183},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48483359813690186},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.44524332880973816},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.44217023253440857},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.4371316432952881},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.43100643157958984},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3872661590576172},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3564050793647766},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35636574029922485},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34680116176605225},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.29741814732551575},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.27815625071525574},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.15815088152885437},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13948211073875427},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007753","descriptor_name":"Laboratories","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007753","descriptor_name":"Laboratories","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007753","descriptor_name":"Laboratories","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab119","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab119","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33690813","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33690813","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10191397","is_oa":true,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10191397/","pdf_url":"https://discovery.ucl.ac.uk/10191397/1/Ahmed_QuArray_formatted__preprint%20for%20REF.pdf","source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Bioinformatics , 37  (18)   pp. 3082-3083.   (2021)      ","raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10191397","is_oa":true,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10191397/","pdf_url":"https://discovery.ucl.ac.uk/10191397/1/Ahmed_QuArray_formatted__preprint%20for%20REF.pdf","source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Bioinformatics , 37  (18)   pp. 3082-3083.   (2021)      ","raw_type":"Article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3134791379.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1977653087","https://openalex.org/W1991927948","https://openalex.org/W2002500046","https://openalex.org/W2015159529","https://openalex.org/W2042850301","https://openalex.org/W2087810003","https://openalex.org/W2107296273","https://openalex.org/W2133059825","https://openalex.org/W2143831002","https://openalex.org/W2146292423","https://openalex.org/W2170249894","https://openalex.org/W2508560490","https://openalex.org/W2762658812","https://openalex.org/W2884597530","https://openalex.org/W2952481429","https://openalex.org/W6650915964"],"related_works":["https://openalex.org/W2042820267","https://openalex.org/W2505786821","https://openalex.org/W1973102274","https://openalex.org/W81600937","https://openalex.org/W2766043371","https://openalex.org/W2095471955","https://openalex.org/W2289002847","https://openalex.org/W2357824555","https://openalex.org/W2166810212","https://openalex.org/W3169794986"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
