{"id":"https://openalex.org/W3127330229","doi":"https://doi.org/10.1093/bioinformatics/btab099","title":"Inference of gene regulatory networks using pseudo-time series data","display_name":"Inference of gene regulatory networks using pseudo-time series data","publication_year":2021,"publication_date":"2021-02-10","ids":{"openalex":"https://openalex.org/W3127330229","doi":"https://doi.org/10.1093/bioinformatics/btab099","mag":"3127330229","pmid":"https://pubmed.ncbi.nlm.nih.gov/33576787"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab099","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab099","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101986509","display_name":"Yuelei Zhang","orcid":"https://orcid.org/0000-0003-3517-4011"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I188935350","display_name":"Anhui University of Finance and Economics","ror":"https://ror.org/0152zzg30","country_code":"CN","type":"education","lineage":["https://openalex.org/I188935350"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuelei Zhang","raw_affiliation_strings":["Institute of Statistics and Applied Mathematics, Anhui University of Finance and Economics , Bengbu 233030, China","School of Mathematics and Statistics, Shandong University , Weihai, Shandong 264209, China"],"affiliations":[{"raw_affiliation_string":"Institute of Statistics and Applied Mathematics, Anhui University of Finance and Economics , Bengbu 233030, China","institution_ids":["https://openalex.org/I188935350"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Shandong University , Weihai, Shandong 264209, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032354393","display_name":"Xiao Chang","orcid":"https://orcid.org/0000-0002-0230-0416"},"institutions":[{"id":"https://openalex.org/I188935350","display_name":"Anhui University of Finance and Economics","ror":"https://ror.org/0152zzg30","country_code":"CN","type":"education","lineage":["https://openalex.org/I188935350"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao Chang","raw_affiliation_strings":["Institute of Statistics and Applied Mathematics, Anhui University of Finance and Economics , Bengbu 233030, China"],"affiliations":[{"raw_affiliation_string":"Institute of Statistics and Applied Mathematics, Anhui University of Finance and Economics , Bengbu 233030, China","institution_ids":["https://openalex.org/I188935350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100397115","display_name":"Xiaoping Liu","orcid":"https://orcid.org/0000-0002-3246-4227"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoping Liu","raw_affiliation_strings":["Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences , Hangzhou 310012, China","School of Mathematics and Statistics, Shandong University , Weihai, Shandong 264209, China"],"affiliations":[{"raw_affiliation_string":"Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences , Hangzhou 310012, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Shandong University , Weihai, Shandong 264209, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5032354393","https://openalex.org/A5100397115"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I188935350","https://openalex.org/I4210165038"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.272,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.88959009,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"37","issue":"16","first_page":"2423","last_page":"2431"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7071586847305298},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6659696102142334},{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.6645298600196838},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6327813267707825},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.585648775100708},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.5808192491531372},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5230063796043396},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.48771628737449646},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4461023211479187},{"id":"https://openalex.org/keywords/regression","display_name":"Regression","score":0.442889928817749},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4310113191604614},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35228949785232544},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3318807780742645},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3215983510017395},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24566331505775452},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2219066321849823},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20280545949935913},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.185014009475708},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1551043689250946},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09336575865745544}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7071586847305298},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6659696102142334},{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.6645298600196838},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6327813267707825},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.585648775100708},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.5808192491531372},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5230063796043396},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.48771628737449646},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4461023211479187},{"id":"https://openalex.org/C83546350","wikidata":"https://www.wikidata.org/wiki/Q1139051","display_name":"Regression","level":2,"score":0.442889928817749},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4310113191604614},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35228949785232544},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3318807780742645},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3215983510017395},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24566331505775452},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2219066321849823},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20280545949935913},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.185014009475708},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1551043689250946},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09336575865745544},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab099","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab099","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33576787","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33576787","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1539812511","display_name":null,"funder_award_id":"61403363","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W1175879704","https://openalex.org/W1526655549","https://openalex.org/W1966011301","https://openalex.org/W1986314158","https://openalex.org/W1996264210","https://openalex.org/W2004136952","https://openalex.org/W2022507599","https://openalex.org/W2034662766","https://openalex.org/W2037544231","https://openalex.org/W2044525257","https://openalex.org/W2068127752","https://openalex.org/W2070822442","https://openalex.org/W2076513103","https://openalex.org/W2083329762","https://openalex.org/W2084332810","https://openalex.org/W2092384224","https://openalex.org/W2105712639","https://openalex.org/W2106927126","https://openalex.org/W2110699703","https://openalex.org/W2111384508","https://openalex.org/W2122708083","https://openalex.org/W2125258701","https://openalex.org/W2126551563","https://openalex.org/W2128962304","https://openalex.org/W2139997707","https://openalex.org/W2157581457","https://openalex.org/W2161922735","https://openalex.org/W2163296115","https://openalex.org/W2164661148","https://openalex.org/W2175406438","https://openalex.org/W2194985241","https://openalex.org/W2303875941","https://openalex.org/W2327972292","https://openalex.org/W2410378998","https://openalex.org/W2460641621","https://openalex.org/W2460857593","https://openalex.org/W2498761000","https://openalex.org/W2508622936","https://openalex.org/W2510258558","https://openalex.org/W2521939318","https://openalex.org/W2544791279","https://openalex.org/W2555391902","https://openalex.org/W2561121788","https://openalex.org/W2561175740","https://openalex.org/W2561884319","https://openalex.org/W2607076347","https://openalex.org/W2621189008","https://openalex.org/W2622088602","https://openalex.org/W2626965946","https://openalex.org/W2757021802","https://openalex.org/W2760441177","https://openalex.org/W2799791049","https://openalex.org/W2801401400","https://openalex.org/W2850647469","https://openalex.org/W2887216660","https://openalex.org/W2899545492","https://openalex.org/W2907471989","https://openalex.org/W2914704480","https://openalex.org/W2951850020","https://openalex.org/W2952382191","https://openalex.org/W2952535935","https://openalex.org/W2953280917","https://openalex.org/W3093153369","https://openalex.org/W3099289621","https://openalex.org/W6725221567"],"related_works":["https://openalex.org/W2949927938","https://openalex.org/W2029387041","https://openalex.org/W2135896045","https://openalex.org/W2032799661","https://openalex.org/W2884256268","https://openalex.org/W2131025197","https://openalex.org/W2799842390","https://openalex.org/W2154615478","https://openalex.org/W2031892952","https://openalex.org/W3108451992"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-15T09:29:46.208133","created_date":"2025-10-10T00:00:00"}
