{"id":"https://openalex.org/W3129184720","doi":"https://doi.org/10.1093/bioinformatics/btab066","title":"RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes","display_name":"RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes","publication_year":2021,"publication_date":"2021-02-03","ids":{"openalex":"https://openalex.org/W3129184720","doi":"https://doi.org/10.1093/bioinformatics/btab066","mag":"3129184720","pmid":"https://pubmed.ncbi.nlm.nih.gov/33538792"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab066","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2126/39622327/btab066.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2126/39622327/btab066.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052177953","display_name":"Gregor Entzian","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gregor Entzian","raw_affiliation_strings":["Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Ivo L Hofacker","raw_affiliation_strings":["Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria","Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna , Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna , Vienna 1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076325273","display_name":"Yann Ponty","orcid":"https://orcid.org/0000-0002-7615-3930"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yann Ponty","raw_affiliation_strings":["LIX, CNRS UMR 7161, Ecole Polytechnique, Institut Polytechnique de Paris , Paris, France"],"affiliations":[{"raw_affiliation_string":"LIX, CNRS UMR 7161, Ecole Polytechnique, Institut Polytechnique de Paris , Paris, France","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086178125","display_name":"Ronny Lorenz","orcid":"https://orcid.org/0000-0002-2144-698X"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Ronny Lorenz","raw_affiliation_strings":["Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081809404","display_name":"Andrea Tanzer","orcid":"https://orcid.org/0000-0003-2873-4236"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Andrea Tanzer","raw_affiliation_strings":["Department of Cell and Developmental Biology, Center for Anatomy and Cell Biology, Medical University of Vienna , Vienna 1090, Austria","Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Developmental Biology, Center for Anatomy and Cell Biology, Medical University of Vienna , Vienna 1090, Austria","institution_ids":["https://openalex.org/I76134821"]},{"raw_affiliation_string":"Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna , Vienna 1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081809404","https://openalex.org/A5086178125"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I76134821"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.244,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.51566544,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"15","first_page":"2126","last_page":"2133"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.7289787530899048},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7186398506164551},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.6112371683120728},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5611380338668823},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5015964508056641},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.4475994110107422},{"id":"https://openalex.org/keywords/energy-landscape","display_name":"Energy landscape","score":0.44588106870651245},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.430502712726593},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4249500036239624},{"id":"https://openalex.org/keywords/langevin-dynamics","display_name":"Langevin dynamics","score":0.42166927456855774},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.41255882382392883},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3299776315689087},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2359485924243927},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.22227418422698975},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11223062872886658}],"concepts":[{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.7289787530899048},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7186398506164551},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.6112371683120728},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5611380338668823},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5015964508056641},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.4475994110107422},{"id":"https://openalex.org/C119621388","wikidata":"https://www.wikidata.org/wiki/Q5377166","display_name":"Energy landscape","level":2,"score":0.44588106870651245},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.430502712726593},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4249500036239624},{"id":"https://openalex.org/C2780004032","wikidata":"https://www.wikidata.org/wiki/Q6485978","display_name":"Langevin dynamics","level":2,"score":0.42166927456855774},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.41255882382392883},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3299776315689087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2359485924243927},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.22227418422698975},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11223062872886658},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab066","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2126/39622327/btab066.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33538792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33538792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-02889448v3","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-02889448","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2021, 37 (15), pp.2126-2133. &#x27E8;10.1093/bioinformatics/btab066&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:8352504","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8352504","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab066","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2126/39622327/btab066.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3129184720.pdf","grobid_xml":"https://content.openalex.org/works/W3129184720.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W44682325","https://openalex.org/W1524617288","https://openalex.org/W1599612900","https://openalex.org/W1600948446","https://openalex.org/W1963871440","https://openalex.org/W1976312746","https://openalex.org/W1984675364","https://openalex.org/W1994958179","https://openalex.org/W2001307989","https://openalex.org/W2008455848","https://openalex.org/W2024179280","https://openalex.org/W2025763720","https://openalex.org/W2030492311","https://openalex.org/W2042332384","https://openalex.org/W2062393760","https://openalex.org/W2071004407","https://openalex.org/W2086561953","https://openalex.org/W2096883982","https://openalex.org/W2098571862","https://openalex.org/W2132920850","https://openalex.org/W2138059105","https://openalex.org/W2149655632","https://openalex.org/W2153140501","https://openalex.org/W2154084198","https://openalex.org/W2158863640","https://openalex.org/W2159117141","https://openalex.org/W2164061693","https://openalex.org/W2166810745","https://openalex.org/W2259938310","https://openalex.org/W2336017145","https://openalex.org/W2400250419","https://openalex.org/W2538566404","https://openalex.org/W2581198607","https://openalex.org/W2618108760","https://openalex.org/W2952752980","https://openalex.org/W2966665879","https://openalex.org/W3083115103","https://openalex.org/W3122583070","https://openalex.org/W6635990290","https://openalex.org/W6646408223"],"related_works":["https://openalex.org/W2186061937","https://openalex.org/W2980640053","https://openalex.org/W2113188411","https://openalex.org/W1974862140","https://openalex.org/W1919653159","https://openalex.org/W2090330632","https://openalex.org/W2083241011","https://openalex.org/W2080251448","https://openalex.org/W2970203514","https://openalex.org/W4252654006"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
