{"id":"https://openalex.org/W3124837667","doi":"https://doi.org/10.1093/bioinformatics/btab028","title":"SeeCiTe: a method to assess CNV calls from SNP arrays using trio data","display_name":"SeeCiTe: a method to assess CNV calls from SNP arrays using trio data","publication_year":2021,"publication_date":"2021-01-13","ids":{"openalex":"https://openalex.org/W3124837667","doi":"https://doi.org/10.1093/bioinformatics/btab028","mag":"3124837667","pmid":"https://pubmed.ncbi.nlm.nih.gov/33459766"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab028","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1876/39353155/btab028.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1876/39353155/btab028.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030397505","display_name":"Ksenia Lavrichenko","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Ksenia Lavrichenko","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen , Bergen, Norway","Department of Clinical Science, University of Bergen , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003572457","display_name":"\u00d8yvind Helgeland","orcid":"https://orcid.org/0000-0002-5612-2985"},"institutions":[{"id":"https://openalex.org/I1333353642","display_name":"Norwegian Institute of Public Health","ror":"https://ror.org/046nvst19","country_code":"NO","type":"funder","lineage":["https://openalex.org/I1333353642","https://openalex.org/I4210149801","https://openalex.org/I4210163359"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"\u00d8yvind Helgeland","raw_affiliation_strings":["Department of Clinical Science, University of Bergen , Bergen, Norway","Department of Genetics and Bioinformatics, Norwegian Institute of Public Health , Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Genetics and Bioinformatics, Norwegian Institute of Public Health , Oslo, Norway","institution_ids":["https://openalex.org/I1333353642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012146929","display_name":"P\u00e5l R. Nj\u00f8lstad","orcid":"https://orcid.org/0000-0003-0304-6728"},"institutions":[{"id":"https://openalex.org/I2800740805","display_name":"Haukeland University Hospital","ror":"https://ror.org/03np4e098","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I2800740805"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"P\u00e5l R Nj\u00f8lstad","raw_affiliation_strings":["Department of Clinical Science, University of Bergen , Bergen, Norway","Department of Pediatrics and Adolescents, Haukeland University Hospital , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Pediatrics and Adolescents, Haukeland University Hospital , Bergen, Norway","institution_ids":["https://openalex.org/I2800740805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012964587","display_name":"Inge Jonassen","orcid":"https://orcid.org/0000-0003-4110-0748"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Inge Jonassen","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021148250","display_name":"Stefan Johansson","orcid":"https://orcid.org/0000-0002-2298-7008"},"institutions":[{"id":"https://openalex.org/I2800740805","display_name":"Haukeland University Hospital","ror":"https://ror.org/03np4e098","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I2800740805"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Stefan Johansson","raw_affiliation_strings":["Department of Clinical Science, University of Bergen , Bergen, Norway","Department of Medical Genetics, Haukeland University Hospital , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Medical Genetics, Haukeland University Hospital , Bergen, Norway","institution_ids":["https://openalex.org/I2800740805"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5012964587","https://openalex.org/A5021148250","https://openalex.org/A5030397505"],"corresponding_institution_ids":["https://openalex.org/I2800740805","https://openalex.org/I4432739"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8656,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.75530499,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"37","issue":"13","first_page":"1876","last_page":"1883"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.8008628487586975},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.6223398447036743},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5797736048698425},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.5449988842010498},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5130785703659058},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4780450463294983},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4617043137550354},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.45739659667015076},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.42438751459121704},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.39623311161994934},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3809298574924469},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3284732699394226},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29651200771331787},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1683938205242157},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11459308862686157},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.08722174167633057},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07843014597892761}],"concepts":[{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.8008628487586975},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.6223398447036743},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5797736048698425},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.5449988842010498},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5130785703659058},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4780450463294983},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4617043137550354},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.45739659667015076},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.42438751459121704},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.39623311161994934},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3809298574924469},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3284732699394226},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29651200771331787},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1683938205242157},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11459308862686157},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.08722174167633057},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07843014597892761},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab028","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1876/39353155/btab028.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33459766","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33459766","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8317106","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8317106","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab028","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1876/39353155/btab028.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G516302236","display_name":null,"funder_award_id":"NNF19OC0057445","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G8068348352","display_name":null,"funder_award_id":"240413","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"}],"funders":[{"id":"https://openalex.org/F4320323078","display_name":"Universitetet i Bergen","ror":"https://ror.org/03zga2b32"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3124837667.pdf","grobid_xml":"https://content.openalex.org/works/W3124837667.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W963499106","https://openalex.org/W1912672559","https://openalex.org/W1967463188","https://openalex.org/W1968002146","https://openalex.org/W1975813398","https://openalex.org/W2034197594","https://openalex.org/W2040948620","https://openalex.org/W2044823121","https://openalex.org/W2058401000","https://openalex.org/W2085755265","https://openalex.org/W2100185570","https://openalex.org/W2142452151","https://openalex.org/W2146948473","https://openalex.org/W2149681218","https://openalex.org/W2329215203","https://openalex.org/W2470567162","https://openalex.org/W2510031061","https://openalex.org/W2513914028","https://openalex.org/W2589201889","https://openalex.org/W2761867792","https://openalex.org/W2799511867","https://openalex.org/W2800243809","https://openalex.org/W2949062400","https://openalex.org/W2952067146","https://openalex.org/W2978681484"],"related_works":["https://openalex.org/W2996064479","https://openalex.org/W2329658823","https://openalex.org/W345949131","https://openalex.org/W1504890006","https://openalex.org/W2387667413","https://openalex.org/W3001862779","https://openalex.org/W4319734519","https://openalex.org/W2021147140","https://openalex.org/W2170850016","https://openalex.org/W2487341481"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
