{"id":"https://openalex.org/W3121345102","doi":"https://doi.org/10.1093/bioinformatics/btab026","title":"VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families","display_name":"VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families","publication_year":2021,"publication_date":"2021-01-14","ids":{"openalex":"https://openalex.org/W3121345102","doi":"https://doi.org/10.1093/bioinformatics/btab026","mag":"3121345102","pmid":"https://pubmed.ncbi.nlm.nih.gov/33471063"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab026","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btab026","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022404104","display_name":"Joan Carles Pons","orcid":"https://orcid.org/0000-0002-0313-3357"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Joan Carles Pons","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of the Balearic Islands , Palma 07122, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0313-3357","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of the Balearic Islands , Palma 07122, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081848590","display_name":"David P\u00e1ez-Espino","orcid":"https://orcid.org/0000-0002-2939-5398"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Paez-Espino","raw_affiliation_strings":["Department of Energy Joint Genome Institute , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045448354","display_name":"Gabriel Riera","orcid":"https://orcid.org/0000-0003-1233-0931"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gabriel Riera","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of the Balearic Islands , Palma 07122, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of the Balearic Islands , Palma 07122, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085966412","display_name":"Natalia Ivanova","orcid":"https://orcid.org/0000-0002-5802-9485"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalia Ivanova","raw_affiliation_strings":["Department of Energy Joint Genome Institute , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikos C Kyrpides","raw_affiliation_strings":["Department of Energy Joint Genome Institute , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086194329","display_name":"Merc\u00e8 Llabr\u00e9s","orcid":"https://orcid.org/0000-0002-5358-6768"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Merc\u00e8 Llabr\u00e9s","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of the Balearic Islands , Palma 07122, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of the Balearic Islands , Palma 07122, Spain","institution_ids":["https://openalex.org/I50441567"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022404104"],"corresponding_institution_ids":["https://openalex.org/I50441567"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":15.1698,"has_fulltext":false,"cited_by_count":136,"citation_normalized_percentile":{"value":0.99504577,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"37","issue":"13","first_page":"1805","last_page":"1813"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9401000142097473,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9401000142097473,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.014299999922513962,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.014000000432133675,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.8137131929397583},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.6355372667312622},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5949817895889282},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5542930364608765},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5054693222045898},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5034016966819763},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49921703338623047},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.4291524887084961},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.381200909614563},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3243246376514435},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3038548529148102},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2456369698047638},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17879799008369446}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.8137131929397583},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.6355372667312622},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5949817895889282},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5542930364608765},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5054693222045898},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5034016966819763},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49921703338623047},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.4291524887084961},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.381200909614563},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3243246376514435},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3038548529148102},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2456369698047638},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17879799008369446},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btab026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab026","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33471063","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33471063","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:ark:/13030/qt2hf286zh","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2hf286zh","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2hf286zh","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 37, iss 13","raw_type":"article"},{"id":"pmh:oai:osti.gov:1778483","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1778483","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1810588","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1810588","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1904109","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1904109","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8830756","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8830756","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab026","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8799999952316284,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[{"id":"https://openalex.org/G3062142014","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G419881185","display_name":null,"funder_award_id":"DEAC02\u201305CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"}],"funders":[{"id":"https://openalex.org/F4320317220","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1552724685","https://openalex.org/W2067127476","https://openalex.org/W2114938008","https://openalex.org/W2169899471","https://openalex.org/W2291003811","https://openalex.org/W2514983714","https://openalex.org/W2521169042","https://openalex.org/W2559100382","https://openalex.org/W2610784236","https://openalex.org/W2734399491","https://openalex.org/W2740966378","https://openalex.org/W2801905545","https://openalex.org/W2883002901","https://openalex.org/W2883134825","https://openalex.org/W2895532240","https://openalex.org/W2900402284","https://openalex.org/W2918063357","https://openalex.org/W2919326595","https://openalex.org/W2943223175","https://openalex.org/W2950044547","https://openalex.org/W2968459265","https://openalex.org/W2996065690","https://openalex.org/W3002419408","https://openalex.org/W3010256223"],"related_works":["https://openalex.org/W2330186985","https://openalex.org/W2950447380","https://openalex.org/W2055448750","https://openalex.org/W2345730070","https://openalex.org/W2107854630","https://openalex.org/W4319294554","https://openalex.org/W3134563641","https://openalex.org/W1986608492","https://openalex.org/W4394186879","https://openalex.org/W3003110834"],"abstract_inverted_index":{"MOTIVATION:":[0],"Two":[1],"key":[2],"steps":[3,28],"in":[4,39,57,191,214,220],"the":[5,14,18,22,32,50,62,89,94,106,117,136,147,152,159,176,198,215,218,239],"analysis":[6],"of":[7,17,24,34,53,64,91,112,119,125,154,166,187,205,211,229,235,249,259],"uncultured":[8],"viruses":[9],"recovered":[10],"from":[11,93,135,238,264],"metagenomes":[12],"are":[13,270],"taxonomic":[15,107],"classification":[16,108],"viral":[19,35,55,68,78,113,246],"sequences":[20,56],"and":[21,80,97,109,150,173,183,207,231],"identification":[23,52],"putative":[25],"host(s).":[26],"Both":[27],"rely":[29],"mainly":[30],"on":[31,116,130],"assignment":[33,118],"proteins":[36,121],"to":[37,122,142,169],"orthologs":[38],"cultivated":[40],"viruses.":[41],"Viral":[42],"Protein":[43],"Families":[44],"(VPFs)":[45],"can":[46,261],"be":[47,262],"used":[48],"for":[49,67,76],"robust":[51],"new":[54],"large":[58],"metagenomics":[59],"datasets.":[60],"Despite":[61],"importance":[63],"VPF":[65],"information":[66],"discovery,":[69],"VPFs":[70,92],"have":[71],"not":[72],"yet":[73],"been":[74],"explored":[75],"determining":[77],"taxonomy":[79],"host":[81,110,153,192,221],"targets.":[82],"RESULTS:":[83],"In":[84,158],"this":[85],"work,":[86],"we":[87,139],"classified":[88,126],"set":[90,124],"IMG/VR":[95,137],"database":[96],"developed":[98],"VPF-Class.":[99],"VPF-Class":[100,129,260],"is":[101],"a":[102,123,180,184,202,208,226,232],"tool":[103],"that":[104],"automates":[105],"prediction":[111,193,222],"contigs":[114,134,145,247],"based":[115],"their":[120],"VPFs.":[127],"Applying":[128],"731K":[131],"uncultivated":[132],"virus":[133],"database,":[138,161],"were":[140,252],"able":[141],"classify":[143,170],"363K":[144],"at":[146,175,197,272],"genus":[148,177,199],"level":[149],"predict":[151],"over":[155,244],"461K":[156],"contigs.":[157],"RefSeq":[160],"VPF-class":[162],"reported":[163],"an":[164],"accuracy":[165,190,219],"nearly":[167],"100%":[168],"dsDNA,":[171],"ssDNA":[172],"retroviruses,":[174],"level,":[178,200],"considering":[179,201,225],"membership":[181,203,227],"ratio":[182,204,228],"confidence":[185,209,233],"score":[186,210,234],"0.2.":[188],"The":[189,257],"was":[194,223],"86.4%,":[195],"also":[196],"0.3":[206],"0.5.":[212],"And,":[213],"prophages":[216],"dataset,":[217,243],"86%":[224],"0.6":[230],"0.8.":[236],"Moreover,":[237],"Global":[240],"Ocean":[241],"Virome":[242],"817K":[245],"out":[248],"1":[250],"million":[251],"classified.":[253],"AVAILABILITY":[254],"AND":[255],"IMPLEMENTATION:":[256],"implementation":[258],"downloaded":[263],"https://github.com/biocom-uib/vpf-tools.":[265],"SUPPLEMENTARY":[266],"INFORMATION:":[267],"Supplementary":[268],"data":[269],"available":[271],"Bioinformatics":[273],"online.":[274]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":31},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":14}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
