{"id":"https://openalex.org/W3126031088","doi":"https://doi.org/10.1093/bioinformatics/btab024","title":"Efficient multiple biomedical events extraction via reinforcement learning","display_name":"Efficient multiple biomedical events extraction via reinforcement learning","publication_year":2021,"publication_date":"2021-01-10","ids":{"openalex":"https://openalex.org/W3126031088","doi":"https://doi.org/10.1093/bioinformatics/btab024","mag":"3126031088","pmid":"https://pubmed.ncbi.nlm.nih.gov/33492356"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab024","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab024","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079405950","display_name":"Weizhong Zhao","orcid":"https://orcid.org/0000-0001-8552-6084"},"institutions":[{"id":"https://openalex.org/I29739308","display_name":"Guangxi Normal University","ror":"https://ror.org/02frt9q65","country_code":"CN","type":"education","lineage":["https://openalex.org/I29739308"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weizhong Zhao","raw_affiliation_strings":["Guangxi Key Lab of Multi-source Information Mining & Security, Guangxi Normal University , Guilin 541004, China","Guangxi Key Laboratory of Trusted Software, Guilin University of Electronic Technology , Guilin 541004, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","School of Computer, Central China Normal University, Wuhan, Hubei 430079, China"],"raw_orcid":"https://orcid.org/0000-0001-8552-6084","affiliations":[{"raw_affiliation_string":"Guangxi Key Lab of Multi-source Information Mining & Security, Guangxi Normal University , Guilin 541004, China","institution_ids":["https://openalex.org/I29739308"]},{"raw_affiliation_string":"Guangxi Key Laboratory of Trusted Software, Guilin University of Electronic Technology , Guilin 541004, China","institution_ids":["https://openalex.org/I5343935"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100362745","display_name":"Yao Zhao","orcid":"https://orcid.org/0000-0002-8581-9554"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yao Zhao","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","School of Computer, Central China Normal University, Wuhan, Hubei 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","School of Computer, Central China Normal University, Wuhan, Hubei 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039602194","display_name":"Tingting He","orcid":"https://orcid.org/0000-0002-5677-2718"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","School of Computer, Central China Normal University, Wuhan, Hubei 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103290593","display_name":"Liu Fan","orcid":null},"institutions":[{"id":"https://openalex.org/I2800752714","display_name":"Comcast (United States)","ror":"https://ror.org/00sgxyw28","country_code":"US","type":"company","lineage":["https://openalex.org/I2800752714"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fan Liu","raw_affiliation_strings":["Comcast Silicon Valley Innovation Center, Sunnyvale, CA 94089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comcast Silicon Valley Innovation Center, Sunnyvale, CA 94089, USA","institution_ids":["https://openalex.org/I2800752714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100369025","display_name":"Ning Li","orcid":"https://orcid.org/0000-0002-4358-6449"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210156404","display_name":"Institute of Information Engineering","ror":"https://ror.org/04r53se39","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210156404"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Li","raw_affiliation_strings":["Institute of Information Engineering, Chinese Academy of Sciences, Beijing 100093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Engineering, Chinese Academy of Sciences, Beijing 100093, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210156404"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5079405950"],"corresponding_institution_ids":["https://openalex.org/I29739308","https://openalex.org/I40963666","https://openalex.org/I5343935"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4307,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.84445771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"37","issue":"13","first_page":"1891","last_page":"1899"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.835076093673706},{"id":"https://openalex.org/keywords/reinforcement-learning","display_name":"Reinforcement learning","score":0.7638620138168335},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6731755137443542},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.6315760612487793},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.62892746925354},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6209996342658997},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5285096764564514},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5271101593971252}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.835076093673706},{"id":"https://openalex.org/C97541855","wikidata":"https://www.wikidata.org/wiki/Q830687","display_name":"Reinforcement learning","level":2,"score":0.7638620138168335},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6731755137443542},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.6315760612487793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.62892746925354},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6209996342658997},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5285096764564514},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5271101593971252},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab024","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab024","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33492356","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33492356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1307575636","display_name":"\u9762\u5411\u8111\u75be\u75c5\u7684\u4eba\u4f53\u80a0\u9053\u5fae\u751f\u7269\u7ec4\u5b66\u6570\u636e\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1820593694","display_name":"\u57fa\u4e8e\u591a\u7ec4\u5b66\u6570\u636e\u7684\u5fae\u751f\u7269\u9ad8\u9636\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61872157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G345651878","display_name":null,"funder_award_id":"CCNU19TD004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4060796902","display_name":null,"funder_award_id":"2017YFC0909502","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6496608217","display_name":null,"funder_award_id":"2019010701011392","funder_id":"https://openalex.org/F4320336636","funder_display_name":"Wuhan Science and Technology Project"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8895969536","display_name":null,"funder_award_id":"61802404","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320336636","display_name":"Wuhan Science and Technology Project","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W2051840895","https://openalex.org/W2098722636","https://openalex.org/W2100276951","https://openalex.org/W2119717200","https://openalex.org/W2135118172","https://openalex.org/W2168316093","https://openalex.org/W2604973964","https://openalex.org/W2612690371","https://openalex.org/W2778973872","https://openalex.org/W2885911173","https://openalex.org/W2911489562","https://openalex.org/W2945465038","https://openalex.org/W3010356924","https://openalex.org/W3036559261","https://openalex.org/W6758293299"],"related_works":["https://openalex.org/W4306904969","https://openalex.org/W2138720691","https://openalex.org/W4362501864","https://openalex.org/W4380318855","https://openalex.org/W3084456289","https://openalex.org/W2024136090","https://openalex.org/W4391331176","https://openalex.org/W2031695474","https://openalex.org/W2586732548","https://openalex.org/W4385572368"],"abstract_inverted_index":{"MOTIVATION:":[0],"Multiple":[1],"events":[2,54,72,197,223],"extraction":[3,17,224],"from":[4],"biomedical":[5,12,15,53,71,154,163,171,179],"literature":[6],"is":[7,18,97,119,135,232],"a":[8,59],"challenging":[9],"task":[10,68,194],"for":[11,51,66,115,121,159],"community.":[13],"Usually,":[14],"event":[16,90,172],"modeled":[19,136],"as":[20,83,99,137],"two":[21,33,176],"sub-tasks,":[22],"trigger":[23,76,118,149],"identification":[24,77],"and":[25,36,78,85,105,207,243],"argument":[26,79,110],"detection.":[27],"Most":[28],"existing":[29],"methods":[30],"perform":[31],"these":[32],"sub-tasks":[34],"sequentially,":[35],"fail":[37],"to":[38,48,144,210],"make":[39],"full":[40],"use":[41],"of":[42,62,69,92,108,125,132,139,148,162,170,195,205],"the":[43,67,89,95,100,106,113,116,123,126,130,133,146,168,183,189,193,203,211,215,226,229,237],"interaction":[44],"between":[45],"them,":[46],"leading":[47],"suboptimal":[49],"results":[50],"multiple":[52,70,196,222],"extraction.":[55,73,173,198],"RESULTS:":[56],"We":[57],"propose":[58],"novel":[60],"framework":[61,185],"reinforcement":[63],"learning":[64,161,240],"(RL)":[65],"More":[74],"specifically,":[75],"detection":[80,111],"are":[81,157],"treated":[82],"main-task":[84],"subsidiary-task,":[86],"respectively.":[87],"Assigning":[88],"type":[91],"triggers":[93],"(in":[94],"main-task)":[96],"viewed":[98],"action":[101],"taken":[102,127],"in":[103,142,214],"RL,":[104],"result":[107,131],"corresponding":[109],"(i.e.":[112],"subsidiary-task)":[114],"identified":[117],"used":[120,178],"computing":[122],"reward":[124],"action.":[128],"Moreover,":[129],"subsidiary-task":[134],"part":[138],"environment":[140],"information":[141,231],"RL":[143,206,227],"help":[145],"procedure":[147],"identification.":[150],"In":[151,218],"addition,":[152,219],"external":[153,208],"knowledge":[155],"bases":[156],"employed":[158],"representation":[160],"text,":[164],"which":[165],"can":[166],"improve":[167],"performance":[169,212],"Results":[174],"on":[175,192],"widely":[177],"corpora":[180],"demonstrate":[181],"that":[182],"proposed":[184,216],"performs":[186],"better":[187],"than":[188,236],"selected":[190],"baselines":[191],"The":[199],"ablation":[200],"test":[201],"indicates":[202],"contributions":[204],"KBs":[209],"improvement":[213],"method.":[217],"by":[220],"modeling":[221],"under":[225],"framework,":[228],"supervised":[230,239],"exploited":[233],"more":[234],"effectively":[235],"classical":[238],"paradigm.":[241],"Availability":[242],"implementationSource":[244],"codes":[245],"will":[246],"be":[247],"available":[248],"at:":[249],"https://github.com/David-WZhao/BioEE-RL.":[250]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
