{"id":"https://openalex.org/W3122087892","doi":"https://doi.org/10.1093/bioinformatics/btab023","title":"TIPP2: metagenomic taxonomic profiling using phylogenetic markers","display_name":"TIPP2: metagenomic taxonomic profiling using phylogenetic markers","publication_year":2021,"publication_date":"2021-01-10","ids":{"openalex":"https://openalex.org/W3122087892","doi":"https://doi.org/10.1093/bioinformatics/btab023","mag":"3122087892","pmid":"https://pubmed.ncbi.nlm.nih.gov/33471121"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab023","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab023","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1839/39353111/btab023.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1839/39353111/btab023.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041586033","display_name":"Nidhi Shah","orcid":"https://orcid.org/0000-0002-7832-1264"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nidhi Shah","raw_affiliation_strings":["Department of Computer Science, University of Maryland College Park , College Park, MD 02740, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland College Park , College Park, MD 02740, USA","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045334836","display_name":"Erin K. Molloy","orcid":"https://orcid.org/0000-0001-5553-3312"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erin K Molloy","raw_affiliation_strings":["Department of Computer Science, University of California Los Angeles , CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California Los Angeles , CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064979917","display_name":"Mihai Pop","orcid":"https://orcid.org/0000-0001-9617-5304"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mihai Pop","raw_affiliation_strings":["Department of Computer Science, University of Maryland College Park , College Park, MD 02740, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland College Park , College Park, MD 02740, USA","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032411541","display_name":"Tandy Warnow","orcid":"https://orcid.org/0000-0001-7717-3514"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tandy Warnow","raw_affiliation_strings":["Department of Computer Science, University of Illinois Urbana-Champaign , Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign , Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032411541","https://openalex.org/A5064979917"],"corresponding_institution_ids":["https://openalex.org/I157725225","https://openalex.org/I66946132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1148,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.87895188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"37","issue":"13","first_page":"1839","last_page":"1845"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7826744318008423},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6091364026069641},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5719258189201355},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5108382105827332},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4824438691139221},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4661371111869812},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.4154842495918274},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4076195955276489},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39357325434684753},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23129871487617493},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16359037160873413},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1538662314414978},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.073941171169281}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7826744318008423},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6091364026069641},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5719258189201355},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5108382105827332},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4824438691139221},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4661371111869812},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.4154842495918274},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4076195955276489},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39357325434684753},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23129871487617493},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16359037160873413},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1538662314414978},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.073941171169281}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab023","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab023","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1839/39353111/btab023.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33471121","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33471121","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8317105","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8317105","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab023","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab023","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1839/39353111/btab023.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1448048428","display_name":null,"funder_award_id":"0725070","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4746304762","display_name":null,"funder_award_id":"OCI-0725070, ACI-1238993","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4911334988","display_name":null,"funder_award_id":"1238993","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5367696895","display_name":null,"funder_award_id":"OCI-0725070","funder_id":"https://openalex.org/F4320332222","funder_display_name":"University of Illinois at Urbana-Champaign"},{"id":"https://openalex.org/G6130078658","display_name":null,"funder_award_id":"ACI-1238993","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G634307144","display_name":null,"funder_award_id":"1513629","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6881773126","display_name":null,"funder_award_id":"1513615","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8082577388","display_name":null,"funder_award_id":"OCI-0725070","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8324313409","display_name":null,"funder_award_id":"ACI-1238993","funder_id":"https://openalex.org/F4320332222","funder_display_name":"University of Illinois at Urbana-Champaign"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332222","display_name":"University of Illinois at Urbana-Champaign","ror":"https://ror.org/047426m28"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3122087892.pdf","grobid_xml":"https://content.openalex.org/works/W3122087892.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1703384511","https://openalex.org/W1748508858","https://openalex.org/W1969346416","https://openalex.org/W1980750600","https://openalex.org/W1984181442","https://openalex.org/W2007447692","https://openalex.org/W2017425843","https://openalex.org/W2027496182","https://openalex.org/W2032230795","https://openalex.org/W2051838613","https://openalex.org/W2053703914","https://openalex.org/W2055043387","https://openalex.org/W2056251063","https://openalex.org/W2095132285","https://openalex.org/W2102555068","https://openalex.org/W2109382511","https://openalex.org/W2124927293","https://openalex.org/W2131026689","https://openalex.org/W2134650310","https://openalex.org/W2141052558","https://openalex.org/W2147783737","https://openalex.org/W2151450114","https://openalex.org/W2151831732","https://openalex.org/W2156542082","https://openalex.org/W2157539385","https://openalex.org/W2159954944","https://openalex.org/W2167046694","https://openalex.org/W2264305005","https://openalex.org/W2345658906","https://openalex.org/W2549717400","https://openalex.org/W2756958651","https://openalex.org/W2762425175","https://openalex.org/W2861777839","https://openalex.org/W2894531697","https://openalex.org/W2897603717","https://openalex.org/W2920716817","https://openalex.org/W2924485771","https://openalex.org/W2963522523"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W3139084279"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
