{"id":"https://openalex.org/W3093765838","doi":"https://doi.org/10.1093/bioinformatics/btab014","title":"Alignment-free Genomic Analysis via a Big Data Spark Platform","display_name":"Alignment-free Genomic Analysis via a Big Data Spark Platform","publication_year":2021,"publication_date":"2021-01-06","ids":{"openalex":"https://openalex.org/W3093765838","doi":"https://doi.org/10.1093/bioinformatics/btab014","mag":"3093765838","pmid":"https://pubmed.ncbi.nlm.nih.gov/33471066"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1658/39119295/btab014.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1658/39119295/btab014.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018051509","display_name":"Umberto Ferraro Petrillo","orcid":"https://orcid.org/0000-0002-4308-5126"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Umberto Ferraro Petrillo","raw_affiliation_strings":["Dipartimento di Scienze Statistiche, Universit\u00e0 di Roma \u2013 La Sapienza , Rome 00185, Italy","Sapienza University of Rome"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Statistiche, Universit\u00e0 di Roma \u2013 La Sapienza , Rome 00185, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Sapienza University of Rome","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075642910","display_name":"Francesco Palini","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Palini","raw_affiliation_strings":["Dipartimento di Scienze Statistiche, Universit\u00e0 di Roma \u2013 La Sapienza , Rome 00185, Italy","Dipartimento di Scienze Statistiche, Universit\u00e0 di Roma - La Sapienza, Rome, 00185, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Statistiche, Universit\u00e0 di Roma \u2013 La Sapienza , Rome 00185, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Dipartimento di Scienze Statistiche, Universit\u00e0 di Roma - La Sapienza, Rome, 00185, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066774697","display_name":"Giuseppe Cattaneo","orcid":"https://orcid.org/0000-0002-6983-4818"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Cattaneo","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Salerno , Fisciano (SA) 84084, Italy","Dipartimento di Informatica, Universit\u00e0 di Salerno, Fisciano, SA 84084, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Salerno , Fisciano (SA) 84084, Italy","institution_ids":["https://openalex.org/I131729948"]},{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Salerno, Fisciano, SA 84084, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078881318","display_name":"Raffaele Giancarlo","orcid":"https://orcid.org/0000-0002-6286-8871"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Raffaele Giancarlo","raw_affiliation_strings":["Dipartimento di Matematica ed Informatica, Universit\u00e0 di Palermo , Palermo 90133, Italy","Dipartimento di Matematica ed Informatica, Universit\u00e0 di Palermo, Palermo 90133, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Matematica ed Informatica, Universit\u00e0 di Palermo , Palermo 90133, Italy","institution_ids":["https://openalex.org/I900890020"]},{"raw_affiliation_string":"Dipartimento di Matematica ed Informatica, Universit\u00e0 di Palermo, Palermo 90133, Italy","institution_ids":["https://openalex.org/I900890020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018051509"],"corresponding_institution_ids":["https://openalex.org/I861853513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0813,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.41499094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":"12","first_page":"1658","last_page":"1665"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.795044481754303},{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.7677798271179199},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7450875043869019},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7042161226272583},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6779555678367615},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5303806662559509},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4202912151813507},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3825047016143799},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3638280928134918},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3183659315109253},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.17035821080207825},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11948034167289734}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.795044481754303},{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.7677798271179199},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7450875043869019},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7042161226272583},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6779555678367615},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5303806662559509},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4202912151813507},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3825047016143799},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3638280928134918},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3183659315109253},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17035821080207825},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11948034167289734},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1658/39119295/btab014.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33471066","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33471066","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2005.00942","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2005.00942","pdf_url":"https://arxiv.org/pdf/2005.00942","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3093765838","is_oa":true,"landing_page_url":"http://arxiv.org/pdf/2005.00942.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2005.00942","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2005.00942","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1658/39119295/btab014.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G486052162","display_name":null,"funder_award_id":"2017WR7SHH","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G895849949","display_name":null,"funder_award_id":"MIUR-PRIN","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320334079","display_name":"Gruppo Nazionale per il Calcolo Scientifico","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093765838.pdf","grobid_xml":"https://content.openalex.org/works/W3093765838.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1886306325","https://openalex.org/W1987591432","https://openalex.org/W1993695973","https://openalex.org/W1996069010","https://openalex.org/W2006075770","https://openalex.org/W2039777025","https://openalex.org/W2053276922","https://openalex.org/W2054419166","https://openalex.org/W2055043387","https://openalex.org/W2057791956","https://openalex.org/W2060425093","https://openalex.org/W2085448729","https://openalex.org/W2087064593","https://openalex.org/W2088082060","https://openalex.org/W2094890728","https://openalex.org/W2113592912","https://openalex.org/W2117897510","https://openalex.org/W2138486754","https://openalex.org/W2168619423","https://openalex.org/W2173213060","https://openalex.org/W2296312486","https://openalex.org/W2468915207","https://openalex.org/W2507619284","https://openalex.org/W2568830712","https://openalex.org/W2611515161","https://openalex.org/W2769842193","https://openalex.org/W2774657098","https://openalex.org/W2811072203","https://openalex.org/W2891646971","https://openalex.org/W2892087261","https://openalex.org/W2950150251","https://openalex.org/W2953328352","https://openalex.org/W2962807110","https://openalex.org/W2994814458","https://openalex.org/W6674647444","https://openalex.org/W6763512572"],"related_works":["https://openalex.org/W2949293135","https://openalex.org/W3017225156","https://openalex.org/W2766461277","https://openalex.org/W1554798758","https://openalex.org/W6307799","https://openalex.org/W2612725769","https://openalex.org/W2406390935","https://openalex.org/W2414985871","https://openalex.org/W2989872182","https://openalex.org/W1512615396","https://openalex.org/W2306173042","https://openalex.org/W2885988341","https://openalex.org/W2117527004","https://openalex.org/W3115424203","https://openalex.org/W3041079259","https://openalex.org/W2202973979","https://openalex.org/W3028861630","https://openalex.org/W2322214049","https://openalex.org/W2518945407","https://openalex.org/W3121342190"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
