{"id":"https://openalex.org/W3108440423","doi":"https://doi.org/10.1093/bioinformatics/btaa976","title":"Deep feature extraction of single-cell transcriptomes by generative adversarial network","display_name":"Deep feature extraction of single-cell transcriptomes by generative adversarial network","publication_year":2020,"publication_date":"2020-11-11","ids":{"openalex":"https://openalex.org/W3108440423","doi":"https://doi.org/10.1093/bioinformatics/btaa976","mag":"3108440423","pmid":"https://pubmed.ncbi.nlm.nih.gov/33226074"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa976","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa976","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101508393","display_name":"Mojtaba Bahrami","orcid":"https://orcid.org/0009-0003-0151-5196"},"institutions":[{"id":"https://openalex.org/I133529467","display_name":"Sharif University of Technology","ror":"https://ror.org/024c2fq17","country_code":"IR","type":"education","lineage":["https://openalex.org/I133529467"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA","IR"],"is_corresponding":false,"raw_author_name":"Mojtaba Bahrami","raw_affiliation_strings":["Department of Computer Engineering, Sharif University of Technology, Tehran 11365-11155, Iran","School of Computer Science, McGill Centre for Bioinformatics, McGill University, Montreal, QC H3A 0E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Sharif University of Technology, Tehran 11365-11155, Iran","institution_ids":["https://openalex.org/I133529467"]},{"raw_affiliation_string":"School of Computer Science, McGill Centre for Bioinformatics, McGill University, Montreal, QC H3A 0E9, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114030609","display_name":"Malosree Maitra","orcid":null},"institutions":[{"id":"https://openalex.org/I2799434747","display_name":"Douglas Mental Health University Institute","ror":"https://ror.org/05dk2r620","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2799434747"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Malosree Maitra","raw_affiliation_strings":["Department of Psychiatry, McGill Group for Suicide Studies, Douglas Mental Health University, Montreal, QC H4H 1R3, Canada","Integrated Program in Neuroscience, McGill University, Montreal QC, H3A 2B4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, McGill Group for Suicide Studies, Douglas Mental Health University, Montreal, QC H4H 1R3, Canada","institution_ids":["https://openalex.org/I2799434747"]},{"raw_affiliation_string":"Integrated Program in Neuroscience, McGill University, Montreal QC, H3A 2B4, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070936342","display_name":"Corina Nagy","orcid":"https://orcid.org/0000-0003-1439-0129"},"institutions":[{"id":"https://openalex.org/I2799434747","display_name":"Douglas Mental Health University Institute","ror":"https://ror.org/05dk2r620","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2799434747"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Corina Nagy","raw_affiliation_strings":["Department of Psychiatry, McGill Group for Suicide Studies, Douglas Mental Health University, Montreal, QC H4H 1R3, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, McGill Group for Suicide Studies, Douglas Mental Health University, Montreal, QC H4H 1R3, Canada","institution_ids":["https://openalex.org/I2799434747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002118289","display_name":"Gustavo Turecki","orcid":"https://orcid.org/0000-0003-4075-2736"},"institutions":[{"id":"https://openalex.org/I2799434747","display_name":"Douglas Mental Health University Institute","ror":"https://ror.org/05dk2r620","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2799434747"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gustavo Turecki","raw_affiliation_strings":["Department of Psychiatry, McGill Group for Suicide Studies, Douglas Mental Health University, Montreal, QC H4H 1R3, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, McGill Group for Suicide Studies, Douglas Mental Health University, Montreal, QC H4H 1R3, Canada","institution_ids":["https://openalex.org/I2799434747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063512925","display_name":"Hamid R. Rabiee","orcid":"https://orcid.org/0000-0002-9835-4493"},"institutions":[{"id":"https://openalex.org/I133529467","display_name":"Sharif University of Technology","ror":"https://ror.org/024c2fq17","country_code":"IR","type":"education","lineage":["https://openalex.org/I133529467"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hamid R Rabiee","raw_affiliation_strings":["Department of Computer Engineering, Sharif University of Technology, Tehran 11365-11155, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Sharif University of Technology, Tehran 11365-11155, Iran","institution_ids":["https://openalex.org/I133529467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100387861","display_name":"Yue Li","orcid":"https://orcid.org/0000-0003-3844-4865"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Yue Li","raw_affiliation_strings":["School of Computer Science, McGill Centre for Bioinformatics, McGill University, Montreal, QC H3A 0E9, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, McGill Centre for Bioinformatics, McGill University, Montreal, QC H3A 0E9, Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100387861"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":null,"apc_paid":null,"fwci":2.1735,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.88523572,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"37","issue":"10","first_page":"1345","last_page":"1351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6723678112030029},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.572142481803894},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.5581665635108948},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5371246337890625},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5230090022087097},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5228638648986816},{"id":"https://openalex.org/keywords/generative-adversarial-network","display_name":"Generative adversarial network","score":0.48736482858657837},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.48416048288345337},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.44957953691482544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43793055415153503},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3813464641571045},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.360657274723053},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.34762340784072876}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6723678112030029},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.572142481803894},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.5581665635108948},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5371246337890625},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5230090022087097},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5228638648986816},{"id":"https://openalex.org/C2988773926","wikidata":"https://www.wikidata.org/wiki/Q25104379","display_name":"Generative adversarial network","level":3,"score":0.48736482858657837},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.48416048288345337},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.44957953691482544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43793055415153503},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3813464641571045},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.360657274723053},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.34762340784072876},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003865","descriptor_name":"Depressive Disorder, Major","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003865","descriptor_name":"Major Depressive Disorder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003865","descriptor_name":"Depressive Disorder, Major","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa976","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa976","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33226074","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33226074","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1580041821","display_name":null,"funder_award_id":"RGPIN-2019-0621","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3783006369","display_name":null,"funder_award_id":"FDN148374","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1580018887","https://openalex.org/W1631320694","https://openalex.org/W1951724000","https://openalex.org/W1959608418","https://openalex.org/W1981641790","https://openalex.org/W2032518018","https://openalex.org/W2096192437","https://openalex.org/W2100495367","https://openalex.org/W2102212449","https://openalex.org/W2104107436","https://openalex.org/W2110768394","https://openalex.org/W2131681506","https://openalex.org/W2145584780","https://openalex.org/W2154408165","https://openalex.org/W2523620612","https://openalex.org/W2526262591","https://openalex.org/W2551194178","https://openalex.org/W2559028527","https://openalex.org/W2738082385","https://openalex.org/W2748637762","https://openalex.org/W2763051133","https://openalex.org/W2774486220","https://openalex.org/W2786808285","https://openalex.org/W2788348358","https://openalex.org/W2791205736","https://openalex.org/W2794480084","https://openalex.org/W2794521141","https://openalex.org/W2794749944","https://openalex.org/W2802349965","https://openalex.org/W2804691345","https://openalex.org/W2901677030","https://openalex.org/W2914966303","https://openalex.org/W2919115771","https://openalex.org/W2942678593","https://openalex.org/W2943693794","https://openalex.org/W2944525406","https://openalex.org/W2949272108","https://openalex.org/W2950504346","https://openalex.org/W2951004968","https://openalex.org/W2951381561","https://openalex.org/W2964121744","https://openalex.org/W2967290233","https://openalex.org/W2979961166","https://openalex.org/W2997834390","https://openalex.org/W3013151148","https://openalex.org/W3020538763","https://openalex.org/W3024013192","https://openalex.org/W3099768174","https://openalex.org/W3100015175","https://openalex.org/W6631190155","https://openalex.org/W6640963894","https://openalex.org/W6751688379","https://openalex.org/W6759641963","https://openalex.org/W6762199457","https://openalex.org/W6776392499"],"related_works":["https://openalex.org/W4365211920","https://openalex.org/W3014948380","https://openalex.org/W4391584540","https://openalex.org/W2888032422","https://openalex.org/W4380551139","https://openalex.org/W4317695495","https://openalex.org/W4395044357","https://openalex.org/W2996316059","https://openalex.org/W4287117424","https://openalex.org/W4387506531"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":9}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
